Locus 2932

Sequence ID 3L_DroMel_CAF1
Location 8,387,096 – 8,387,208
Length 112
Max. P 0.668680
window4574

overview

Window 4

Location 8,387,096 – 8,387,208
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 87.82
Mean single sequence MFE -41.10
Consensus MFE -33.21
Energy contribution -33.47
Covariance contribution 0.25
Combinations/Pair 1.24
Mean z-score -2.15
Structure conservation index 0.81
SVM decision value 0.29
SVM RNA-class probability 0.668680
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8387096 112 - 23771897
UCUUCCCCUUCGUGCCCAUAUUCUCGAUGGGCGAGAGAUUGGGCGAACGGAAGUUGCCAAAGAUCGGAGUAGAGCAUCGCACGUUGGAGGUGUUCACCUUCAGGGUGUUCCA
..(((..((((.(((((((.......)))))))...((((.(((.(((....))))))...))))))))..)))....((((.((((((((....)))))))).)))).... ( -44.80)
>DroSec_CAF1 1067 109 - 1
UCUU---CUUCGUGCCCAUAUUCUCGAUGGGCGAGAGAUUGGGCGAACGGAAGUUGCCGAAGAUCGGAGUAGAGCAUCGCACGUUGGAGGUGUUCACCUUCAGGGUGUUCCA
(((.---((((.(((((((.......))))))).((..((.(((.(((....)))))).))..)))))).))).....((((.((((((((....)))))))).)))).... ( -45.80)
>DroSim_CAF1 1079 109 - 1
UCUU---CUUCGUGCCCAUAUUCUCGAUGGGCGAGAGAUUGGGCGAACGGAAGUUGCCGAAGAUCGGAGUAGAGCAUCGCACGUUGGAGGUGUUCACCUUCAGGGUGUUCCA
(((.---((((.(((((((.......))))))).((..((.(((.(((....)))))).))..)))))).))).....((((.((((((((....)))))))).)))).... ( -45.80)
>DroEre_CAF1 1072 109 - 1
UCUU---CUUUGUGCCCAUAUUCUCAAUGGGCGAAAGAUUGGGCGAACGGAAGUUGCCGAAAAUCGGAGUAGAGCAUCGCACGUUGGAGGUGUUCACCUUCAGGGUGUUCCA
...(---((((.(((((((.......))))))))))))((.(((.(((....)))))).))....((((.....)...((((.((((((((....)))))))).))))))). ( -42.00)
>DroYak_CAF1 1008 109 - 1
UCUU---CUUGGUGCCCAUGCUCUCGAUGGGCGAAAGAUUGGGCGAACGGAAGUUUCCGAAAAUCGGCGUAGAGCAUCGCACGUUGGUGGUGUUCACUUUGAGGGUGUUCCA
((((---(..((((((..(((((.....)))))...((((.((.((((....))))))...)))))))...(((((((((......))))))))))))..)))))....... ( -38.20)
>DroAna_CAF1 1040 109 - 1
UCUU---UUUGCCCUUCAUGGUCUCAAUGGGUGACAGAUUUGGCGAACGAAAGUCGCCGUAAAUAGGUGUGGAACAGCGCACAUUGGUGGUGUUCACUUUCAGAGUAUUCCA
(((.---((((((..((...(((.(.....).))).))...)))))).((((((((((.......))))..(((((.(((......))).))))))))))))))........ ( -30.00)
>consensus
UCUU___CUUCGUGCCCAUAUUCUCGAUGGGCGAGAGAUUGGGCGAACGGAAGUUGCCGAAAAUCGGAGUAGAGCAUCGCACGUUGGAGGUGUUCACCUUCAGGGUGUUCCA
.........((.(((((((.......))))))).))((((.(((((.(....))))))...))))(((..........((((.((((((((....)))))))).))))))). (-33.21 = -33.47 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:18 2006