| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,385,535 – 8,385,654 |
| Length | 119 |
| Max. P | 0.824521 |
| Location | 8,385,535 – 8,385,654 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.32 |
| Mean single sequence MFE | -30.36 |
| Consensus MFE | -25.04 |
| Energy contribution | -25.28 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8385535 119 + 23771897 CAACAAAAGUUGGCGUCUUGGCUGGAGAUGGCAGUUUGGCGGGUUUUUCCGUUAGUUUUGGCUUU-UAAAACUAGGACUUGACUAAUAAACUAGUACUAGUAGUAAAAACAAUUUAUUUA ...(((((.(((.((((((.....)))))).))).((((((((....)))))))))))))(.(((-((..(((((......((((......)))).)))))..))))).).......... ( -26.80) >DroSec_CAF1 16726 116 + 1 CAACAAAAGUUGGCGUCUUGGCUGGAGAUGGCAGUUUGGCGGGUUUUUCCGUUAGUUUUGGCUU--UAAAGCUAAGACUUGACUAGUAAACUAGAUCUAGUAGAAAAAAU-A-UUAAUGA ((((....))))(((((((((((..(((.(.(((.((((((((....))))))))..))).)))--)..)))))))))..((((((....)))).))..)).........-.-....... ( -33.20) >DroSim_CAF1 17029 112 + 1 CAACAAAAGUUGGCGUCUUGGCUGGAGAUGGCAGUUUGGCGGGUUUUUCCGUUAGUUUUGGCUUU-UAAAGCUAGGACUUGAUUAGUAAACUAG---UAGUAAAAUAA---A-UUGAUUA ((((....))))(((((((((((..(((.(.(((.((((((((....))))))))..))).).))-)..)))))))))...(((((....))))---).)).......---.-....... ( -32.00) >DroEre_CAF1 15289 115 + 1 CAACAAAAGUUGGCGUCUUGGCUAGAGAUGGCAGUUUGGCGGGGUUUUCCGACAGUUUUGGCUUUUUAAAGC--AGAUUUGGCACGUUAA-UAUAAAUCUUUGAAAAACA-G-UAAAUAA ........(((((...(((.((((((........)))))).)))....))))).(((((.((((....))))--(((((((.........-..)))))))....))))).-.-....... ( -22.80) >DroYak_CAF1 15296 111 + 1 CAACAAAAGUUGGCGUCUUGGCCCGAGAUGGCAGUUUGGCGGGUUUUUCCGUCAGUUUUGGCUUUUUAAAGCCAAGACUUGUCAGGUGAA-UAGUAAUCUUUGGAA-ACA-G------AA ((((....))))((...((.(((.....((((((..(((((((....)))))))((((((((((....))))))))))))))))))).))-..))....((((...-.))-)------). ( -37.00) >consensus CAACAAAAGUUGGCGUCUUGGCUGGAGAUGGCAGUUUGGCGGGUUUUUCCGUUAGUUUUGGCUUU_UAAAGCUAAGACUUGACUAGUAAACUAGAAAUAGUAGAAAAAAA_A_UUAAUAA ((((....))))..(((((((((......(((...((((((((....)))))))).....)))......))))))))).......................................... (-25.04 = -25.28 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:17 2006