| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,384,643 – 8,384,745 |
| Length | 102 |
| Max. P | 0.745324 |
| Location | 8,384,643 – 8,384,745 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.85 |
| Mean single sequence MFE | -36.38 |
| Consensus MFE | -26.46 |
| Energy contribution | -26.10 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8384643 102 + 23771897 AGGAUAGCGUUUGGCUCCAGUCCACCACACCGAUGGUGUCCACACUGCCAGGACCGCUGGCCGGACAACAUUGGACACUGAAGACGUUGCUGUUGGGCCCAC .((..((((((((((....))).......((((((.(((((.....(((((.....))))).))))).)))))).......)))))))(((....))))).. ( -32.20) >DroVir_CAF1 20844 102 + 1 ACGACAGCGUCUGGCCCCAGUCGGCAAUGGCAAUGGUGUCCACAUUGCCAGCGCCAUUUGCCGGACAGCACUGUACGCUGAACACGGAGCUGUUGGGACCAC .((((((((((((((...(((.(((..((((((((.......))))))))..)))))).)))))))(((.......))).........)))))))....... ( -44.00) >DroEre_CAF1 14403 102 + 1 AGGAUAGCGUUUGGCUCCAGUCCACCACACCAAUGGUGUCUACACUGCCAGGACCACUGGCCGGACAGCAUUGGACACUAAAAACAUUGCUAUUGGGGCCAC ...........((((((((((((...(((((...))))).......(((((.....))))).))))((((.((...........)).))))..)))))))). ( -38.40) >DroYak_CAF1 14405 102 + 1 AAGAUAGCGUUUGGCUCCAGUCCACCACACCAAUGGUGUCCACGCUGCCAGGACCACUGGCCGGACAACAUUGGACACUGAAGACAUUGCUGUUGGGCCCAC ..(((((((..((.((.((((........((((((.(((((.....(((((.....))))).))))).))))))..)))).)).)).)))))))........ ( -33.40) >DroMoj_CAF1 22704 102 + 1 AGGACAGCGUCUGCCCCCAGUCGGCAACGGCAAUGGUGUCCACGCUGCCAGCACCAUUGACUGGACAGCACUGUACGCUAAAGACGCAGCUGCUCGAGCCAC .((..((((.((((.....((((....))))..((((((.((.((((((((((....)).)))).))))..)).)))))).....)))).))))....)).. ( -38.90) >DroAna_CAF1 11038 102 + 1 AGGACAGCGUCUGACUCCAGUCUACCACACCGAUGGUAUCCACACAGCCUGGUCCAUUGGCCGGACAGCAUUGGACGCUGAAAACGUUACUGUUGGGACCAC .((.(((((((((((....)))..((...(((((((...(((.......))).)))))))..))........))))))))..((((....))))....)).. ( -31.40) >consensus AGGACAGCGUCUGGCUCCAGUCCACCACACCAAUGGUGUCCACACUGCCAGGACCACUGGCCGGACAGCAUUGGACACUGAAGACGUUGCUGUUGGGACCAC ..(((((((.(((....))).).......((((((.(((((.....(((((.....))))).))))).))))))..............))))))........ (-26.46 = -26.10 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:16 2006