Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 831,563 – 831,659 |
Length | 96 |
Max. P | 0.909022 |
Location | 831,563 – 831,659 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 73.47 |
Mean single sequence MFE | -36.12 |
Consensus MFE | -17.06 |
Energy contribution | -19.45 |
Covariance contribution | 2.39 |
Combinations/Pair | 1.24 |
Mean z-score | -1.89 |
Structure conservation index | 0.47 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 831563 96 + 23771897 GAAUUGGGUGAGUUGAGGAUGAGCCAGGCCACCGACACCGAGCACUGGAGCACCAUCCAGGCCUUGUUCGGUGAAGGAGAGC--CAAGAAGUCAACUC-------- .........(((((((((.....)).((((.((..((((((((((((((......)))))....)))))))))..)).).))--)......)))))))-------- ( -39.20) >DroPse_CAF1 6770 105 + 1 GAGCUGUCCGAGCUGAGGGUGCGACAAUCUACAGAUUCGGAGCACUGGCAGACCAUACACGCUCUGUUCGGUGAACAG-GGCACUGGGGAGACGACUCCCCGUGCC ...((((((((((.((((((((..(((((....)))).)..)))))((....)).......))).))))))...))))-(((((.((((((....))))))))))) ( -47.30) >DroSec_CAF1 6051 96 + 1 GAAUUGGGUGAGUUGAGGAUGAGCCAGGCCACCGACACCGAGCACUGGAGCACCAUCCAGGCCUUGUUCGGCGAUGGAGAGC--AAAGAAGUCAACUC-------- .........(((((((((.....))..(((.(((.(.((((((((((((......)))))....))))))).).))).).))--.......)))))))-------- ( -31.90) >DroSim_CAF1 5479 95 + 1 GAAUUGGGUGAGUUGAGGAUGAGCCAGGCCACCGACACCGAGCACUGGAGCACCAUCCAGGCCUUGUUCGGUGAUGGA-AGC--AAAGGAGUCAACUC-------- .........(((((((((.....))..((..(((.((((((((((((((......)))))....))))))))).))).-.))--.......)))))))-------- ( -35.40) >DroEre_CAF1 6898 96 + 1 GAGUUGGGAGAGUUGCGGAUAAGCCAGGCCACCGACACCGAGCACUGGAGCACCAUUCAAGCCUUGUUCGGUGACGGAGGGC--CAAGAAGGCAACCC-------- ...........(((((((.....)).((((.(((.(((((((((..((.((.........))))))))))))).)))..)))--)......)))))..-------- ( -37.30) >DroAna_CAF1 6486 96 + 1 GAGUUAAAUGAACUGCGACUUCGUCAGGCCUCAGAAACCGAGCACUGGCAGACCAUUCAGGCCUUGUUCGGUGAAGGAUCUA--AUGAAAUUCAACAU-------- (((((.......(((((....)).))).(((.....((((((((..(((.((....))..))).))))))))..))).....--....))))).....-------- ( -25.60) >consensus GAAUUGGGUGAGUUGAGGAUGAGCCAGGCCACCGACACCGAGCACUGGAGCACCAUCCAGGCCUUGUUCGGUGAAGGAGAGC__AAAGAAGUCAACUC________ .........(((((((((.....))......((..((((((((((((((......)))))....)))))))))..))..............)))))))........ (-17.06 = -19.45 + 2.39)
Location | 831,563 – 831,659 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 73.47 |
Mean single sequence MFE | -35.01 |
Consensus MFE | -17.12 |
Energy contribution | -17.85 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.29 |
Mean z-score | -2.02 |
Structure conservation index | 0.49 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 831563 96 - 23771897 --------GAGUUGACUUCUUG--GCUCUCCUUCACCGAACAAGGCCUGGAUGGUGCUCCAGUGCUCGGUGUCGGUGGCCUGGCUCAUCCUCAACUCACCCAAUUC --------(((((((......(--(((..((..((((((.....(((((((......))))).))))))))..)).)))).((.....)))))))))......... ( -35.10) >DroPse_CAF1 6770 105 - 1 GGCACGGGGAGUCGUCUCCCCAGUGCC-CUGUUCACCGAACAGAGCGUGUAUGGUCUGCCAGUGCUCCGAAUCUGUAGAUUGUCGCACCCUCAGCUCGGACAGCUC (((((((((((....)))))).)))))-((((...((((.(.(((.(((((..((((((.((..........))))))))..).)))).))).).))))))))... ( -45.30) >DroSec_CAF1 6051 96 - 1 --------GAGUUGACUUCUUU--GCUCUCCAUCGCCGAACAAGGCCUGGAUGGUGCUCCAGUGCUCGGUGUCGGUGGCCUGGCUCAUCCUCAACUCACCCAAUUC --------(((((((.......--(((.....(((((((((..((((((((......))))).)))..)).)))))))...)))......)))))))......... ( -33.32) >DroSim_CAF1 5479 95 - 1 --------GAGUUGACUCCUUU--GCU-UCCAUCACCGAACAAGGCCUGGAUGGUGCUCCAGUGCUCGGUGUCGGUGGCCUGGCUCAUCCUCAACUCACCCAAUUC --------(((((((.......--(((-....(((((((((..((((((((......))))).)))..)).)))))))...)))......)))))))......... ( -35.02) >DroEre_CAF1 6898 96 - 1 --------GGGUUGCCUUCUUG--GCCCUCCGUCACCGAACAAGGCUUGAAUGGUGCUCCAGUGCUCGGUGUCGGUGGCCUGGCUUAUCCGCAACUCUCCCAACUC --------(((((((......(--(((..(((.((((((.((.(((.........)))....)).)))))).))).)))).((.....)))))))))......... ( -37.10) >DroAna_CAF1 6486 96 - 1 --------AUGUUGAAUUUCAU--UAGAUCCUUCACCGAACAAGGCCUGAAUGGUCUGCCAGUGCUCGGUUUCUGAGGCCUGACGAAGUCGCAGUUCAUUUAACUC --------..(((((((....(--((((......(((((...(((((.....)))))((....))))))).)))))(..(((.((....)))))..)))))))).. ( -24.20) >consensus ________GAGUUGACUUCUUU__GCUCUCCUUCACCGAACAAGGCCUGGAUGGUGCUCCAGUGCUCGGUGUCGGUGGCCUGGCUCAUCCUCAACUCACCCAACUC ........(((((((.................(((((((((..(((.....(((....)))..)))..)).)))))))...((.....)))))))))......... (-17.12 = -17.85 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:32 2006