Locus 2929

Sequence ID 3L_DroMel_CAF1
Location 8,374,469 – 8,374,559
Length 90
Max. P 0.759673
window4571

overview

Window 1

Location 8,374,469 – 8,374,559
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -31.93
Consensus MFE -22.69
Energy contribution -24.05
Covariance contribution 1.36
Combinations/Pair 1.30
Mean z-score -1.66
Structure conservation index 0.71
SVM decision value 0.50
SVM RNA-class probability 0.759673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8374469 90 - 23771897
UAACACGGGAGAUGCUAUCGAUGCCGAGCAUCAAGACGCUCGGAGGUCUCUGAUAGCCCUUGGCGUCGGCCUCGGACGCCAUUCGUAAUC
....(((((....(((((((((.((((((........))))))..)))...))))))...(((((((.......)))))))))))).... ( -34.50)
>DroSec_CAF1 5652 90 - 1
UAACACGGGAGAUGCUAUCGAUGCCGAGCAUCAAGACGCUUGGAGGUCUCUGAUAGCCCUUGGCGUCGGCCUCGGACGCCAUUCGCAAUC
......(.(((..(((((((((.((((((........))))))..)))...))))))...(((((((.......)))))))))).).... ( -32.00)
>DroSim_CAF1 5934 90 - 1
UAACACGGGAGAUGCUAUCGAUGCCGAGCAUCAAGACGCUCGGCGGUCUCUGAUAGCCCUUGGCGUCGGCCUCGGACGCCAUUCGUAAUC
....(((((....(((((((.((((((((........)))))))).....)))))))...(((((((.......)))))))))))).... ( -37.40)
>DroEre_CAF1 4288 90 - 1
UGACACGAGAGAUGCUAUCGAUGCCGAGCAUCAAGACGCUCGGAGGUCUCGGAUAGCCCUUGGCGUCCGCCUCAGAUGCCACUUGUAAUC
....(((((....(((((((((.((((((........))))))..)))...))))))...(((((((.......)))))))))))).... ( -33.40)
>DroYak_CAF1 4240 90 - 1
UAACACGGGAUAUGCUAUCGAUGCCGAGCAUCAGGACGCUCGGAGGUCUCGGAUAGCCCUUGGCGUCCGCCUCAGCAGCCACUUGUAAUC
..(((.(((...((((...(((((...))))).(((((((.((.(((........))))).))))))).....)))).)).).))).... ( -32.10)
>DroPer_CAF1 861 84 - 1
UAGCCCGAGAUAUGCUGUCGAUGCCUAGCAUCAGCACACUGAGAGGCCGCAGUUUCUUCUUCUUCUCCACCC-GG-----UCUUUCAGCC
..((....(((.....)))(((((...))))).))...(((((((((((......................)-))-----)))))))).. ( -22.15)
>consensus
UAACACGGGAGAUGCUAUCGAUGCCGAGCAUCAAGACGCUCGGAGGUCUCUGAUAGCCCUUGGCGUCCGCCUCGGACGCCACUCGUAAUC
....(((((....(((((((((.((((((........))))))..)))...))))))...(((((((.......)))))))))))).... (-22.69 = -24.05 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:15 2006