Locus 2928

Sequence ID 3L_DroMel_CAF1
Location 8,374,269 – 8,374,389
Length 120
Max. P 0.728525
window4570

overview

Window 0

Location 8,374,269 – 8,374,389
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.50
Mean single sequence MFE -45.80
Consensus MFE -37.21
Energy contribution -37.35
Covariance contribution 0.14
Combinations/Pair 1.19
Mean z-score -2.25
Structure conservation index 0.81
SVM decision value 0.42
SVM RNA-class probability 0.728525
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8374269 120 + 23771897
CAAGCAGCUCCAUUGCUGCUACAUGUCGGUGCAGCGAGUGGACGAGAUGAAGGUCAAGUACACCAAGUGUCAAACCUUCAAGGGAAGCAUCCUGCUGCCCGAUUCCGCCGAGGGCAUCAU
..((((((......)))))).......(((((..((.(((((.....(((((((...(.((((...)))))..))))))).(((.(((.....))).)))...)))))))...))))).. ( -46.70)
>DroSec_CAF1 5452 120 + 1
CAAGCAGCUCCACUGCUGCUACAUGGCGGUGCAGCGGGUGGACGAGAUGAAGGUCAAGUACACCAAGUGUCAAACCUUCAAGGGGAGCAUCCUGCUGCCCGAUUCCGCCGAGAGCAUCAU
...((.(((.(((((((.......))))))).))).((((((.....(((((((...(.((((...)))))..))))))).(((.(((.....))).)))...))))))....))..... ( -48.40)
>DroSim_CAF1 5734 120 + 1
CCAGUAGCUCCACUGCUGCUACAUGGCGGUGCAGCGGGUGGACUAGAUGAAGGUCAAGUACACCAAGUGUCAAACCUUCAAGGGGAGCAUGCUGCUGCCCGAUUCCGCCGAGAGCAUCAU
......(((((..((((((.((......))))))))((((((.....(((((((...(.((((...)))))..))))))).(((.(((.....))).)))...))))))).))))..... ( -47.40)
>DroEre_CAF1 4088 120 + 1
CAAGCAGCUCCACUGCUGCUACAUGGCGGUGCAGCGGGUGGACGAGAUGAAGGUCAAGUACACCAAGUGUCAAACCUUCAAGGGGAGCACCCCGCUGCCCGAUUCCGCCGAGGGCAUCAU
..((((((......)))))).(.((((((.....((((..(.(....(((((((...(.((((...)))))..))))))).((((....))))))..))))...)))))).)........ ( -50.90)
>DroYak_CAF1 4040 120 + 1
CAAACAGCUCCACUGCUGCUACAUGGCCGUGCAGCGGGUGGACGAGAUGAAGGUCAAGUACACCAAGUGUCAAACCUUCAAGGGCAGCACCCUGCUGCCCAAUUCCGCCGAGGGCAUCAU
......(((((..((((((.((......))))))))((((((.....(((((((...(.((((...)))))..))))))).(((((((.....)))))))...))))))).))))..... ( -51.10)
>DroAna_CAF1 641 120 + 1
CCAUCAGCUGCACUGCUGCUAUAUGGUGGUGGAGCGGAUCAAUGAGUCGGAGGUCAACUACACAAAAUGUCAUGUUUUCAAGGGAAGCACCGAACUACCCAAUUCCGCAGAGGGCAUCAU
((.((.(((.(((..((.......))..))).)))(((......((((((((.....)).............((((((.....))))))))).))).......)))...))))....... ( -30.32)
>consensus
CAAGCAGCUCCACUGCUGCUACAUGGCGGUGCAGCGGGUGGACGAGAUGAAGGUCAAGUACACCAAGUGUCAAACCUUCAAGGGGAGCACCCUGCUGCCCGAUUCCGCCGAGGGCAUCAU
......(((((.(((((((.((......)))))))))(((((.....(((((((.....((((...))))...))))))).(((.(((.....))).)))...))))).).))))..... (-37.21 = -37.35 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:14 2006