| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,367,768 – 8,367,873 |
| Length | 105 |
| Max. P | 0.966311 |
| Location | 8,367,768 – 8,367,873 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 70.48 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -10.89 |
| Energy contribution | -12.23 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.966311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8367768 105 - 23771897 CAUAUAACAAUUCCAUAUUGGUCAUAGUUUUGCUGUGAUUAAAGUUUAAUAUGAAUUUAAGUCAUAUGGAUUUGUUAUCUCAUUUGCUUCCAUUAAACAUUUCAC ...(((((((.((((((((((((((((.....)))))))))((((((.....)))))).....))))))).)))))))........................... ( -23.20) >DroSec_CAF1 4182 94 - 1 UAGAUAACGAUUCCAUAUUGACUAUCGUUUUGCUGUAAUUAAAGUUUAAUAUGAAUUUUAGCCUAACGGAUUUGUUAUCUCUU-----------UAACACCCCAC .(((((((((.(((.....(.....)(((..((((.((((...((.....)).)))).))))..)))))).)))))))))...-----------........... ( -18.90) >DroYak_CAF1 4769 98 - 1 UAGAUAACGAUUUCUU-------AUAGUUUUGCUGUGAUUAAAGUUUACAAUGAAUGGCAGACUCACGGCUUUGUUAUCUUAUUGGCUUUCAUUGACCACUCCAC .(((((((((......-------........(((((((.....((((.((.....))..))))))))))).)))))))))...((((.......).)))...... ( -17.16) >consensus UAGAUAACGAUUCCAUAUUG___AUAGUUUUGCUGUGAUUAAAGUUUAAUAUGAAUUUAAGACUAACGGAUUUGUUAUCUCAUU_GCUU_CAUUAAACACUCCAC .(((((((((.(((........(((((.....)))))....((((((.....)))))).........))).)))))))))......................... (-10.89 = -12.23 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:11 2006