Locus 2924

Sequence ID 3L_DroMel_CAF1
Location 8,366,198 – 8,366,318
Length 120
Max. P 0.871888
window4563

overview

Window 3

Location 8,366,198 – 8,366,318
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -40.07
Consensus MFE -30.36
Energy contribution -30.00
Covariance contribution -0.36
Combinations/Pair 1.24
Mean z-score -1.98
Structure conservation index 0.76
SVM decision value 0.87
SVM RNA-class probability 0.871888
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8366198 120 - 23771897
UAAAUAUUUUUAUUCAAUCGAAAAUCGUUGCUUAGUAGUAAGCAAUGCCGGUGUGGUCACGGAUCCAGUCCAAGUGGUAGGUCACACGCUGGAAGCCAGCGGGGUGGCCAGCCUGGCAAC
..........................((((((((....))))))))(((((..(((((((((((...))))..((((....)))).((((((...))))))..)))))))..)))))... ( -43.50)
>DroPse_CAF1 2785 102 - 1
CAAACAUUUUUA---------AAAU---------UUAGUAAGAAAUUCCAGUGUGGUCGCGGAUCCAGUCCAGGUGGUAGGUGACGCGCUGGAAGCCAGCCGGAUGACCGGCCUGGCAGC
......((((((---------....---------....)))))).((((((((((.((((....(((.......)))...))))))))))))))(((((((((....)))).)))))... ( -38.80)
>DroEre_CAF1 2564 120 - 1
CAAAUUUUUUUAUUCAAUCGAAAAUCGGUGCUUAGUAGUAAGCAAUGCCGGUGUGGUCGCGGAUCCAGUCCAGGUGGUAGGUCACACGCUGGAAGCCAGCGGGGUGGCCAGCCUGGCAAC
.............((...(((..(((((((((((....)))))...))))))....)))..))....(.((((((....((((((.((((((...))))))..)))))).)))))))... ( -44.50)
>DroYak_CAF1 3002 120 - 1
CAAAUAUUUUUAUUCAAUCGAAAAUCGUUGCUUAGUAGUAAGCGAUGCCGGUGUGGUCGCGGAUCCAGUCCAGGUGGUAGGUCACACGCUGGAAGCCAGCGGGGUGGCCAGCCUGGCAAC
..........................((((((((....))))))))(((((..(((((((((((...))))..((((....)))).((((((...))))))..)))))))..)))))... ( -42.60)
>DroAna_CAF1 3956 104 - 1
GAAUAAUUUUUAUU----------UCGUU------UAGUAAGCAAUGCCGGUAUGAUCGCGGAUCCAGUCCAGGUGGUAGGUCACACGCUGGAAGCCAGCAGGGUGACCAACUUGGCAGC
........((((((----------.....------.))))))...(((((((((.(((..((((...)))).))).)))((((((..(((((...)))))...))))))...)))))).. ( -32.20)
>DroPer_CAF1 2795 102 - 1
CAAACAUUUUUA---------AAAU---------UUAGUAAGAAAUUCCAGUGUGGUCGCGGAUCCAGUCCAGGUGGUAGGUGACGCGCUGGAAGCCAGCCGGAUGACCGGCCUGGCAGC
......((((((---------....---------....)))))).((((((((((.((((....(((.......)))...))))))))))))))(((((((((....)))).)))))... ( -38.80)
>consensus
CAAAUAUUUUUAUU_______AAAUCGUU_____GUAGUAAGCAAUGCCGGUGUGGUCGCGGAUCCAGUCCAGGUGGUAGGUCACACGCUGGAAGCCAGCGGGGUGACCAGCCUGGCAAC
.............................................((((((..(((((((((((...))))..(((........)))(((((...)))))...)))))))..)))))).. (-30.36 = -30.00 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:07 2006