Locus 2922

Sequence ID 3L_DroMel_CAF1
Location 8,348,297 – 8,348,390
Length 93
Max. P 0.987694
window4560

overview

Window 0

Location 8,348,297 – 8,348,390
Length 93
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.89
Mean single sequence MFE -23.94
Consensus MFE -21.24
Energy contribution -22.08
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.89
SVM decision value 2.09
SVM RNA-class probability 0.987694
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8348297 93 + 23771897
AAAACUAAAGACGGCGGUCGAGAUAAAUAAACGAAAUAAGUUUUAGGGCCUAGUGGCCCAAACAAGAGCUA---GGUGGUUCAGGUGUUAAUUUCC
.........(((....)))(((((.((((..........((((..(((((....)))))))))..(((((.---...)))))...)))).))))). ( -23.20)
>DroSec_CAF1 26729 92 + 1
CAACCAAAAGACGGCGGUCGAGAUAAAUAAACGAAAUAAGUUUUAGGGCCUAGUGGCCCAAACAAGAGCU----GGUGGUUCAGGUGUUAAUUUCC
.........(((....)))(((((.((((..........((((..(((((....)))))))))..((((.----....))))...)))).))))). ( -22.40)
>DroSim_CAF1 26979 96 + 1
AGACCAAAAGACGGCGGUCGAGAUAAAUAAACGAAAUAAGUUUUAGGGCCUAGUGGCCCAAACAAGAGCUAGGUGGUGGUUCAGGUGUUAAUUUCC
.((((..........))))(((((.((((..........((((..(((((....)))))))))..((((((.....))))))...)))).))))). ( -26.20)
>DroEre_CAF1 27277 93 + 1
AAGACAAAAGACAGCGGUCGAGGAAAAUAAACGAAAAAAGUUGUAGGGCCUAGUGGCCCAAACAAGCGCUA---GGUGGUUCAGGUGUUAAUUUCC
.........(((....)))..(((((.............(((...(((((....))))).))).((((((.---((....)).))))))..))))) ( -23.90)
>DroYak_CAF1 27331 93 + 1
AAAACAAAAGACAGCGGUCGAGAGAAAUAAACGAAAUAAGUUUUAGGGCCUAGUGGCCCAAACAAGAGCUA---GGUGGUUCAGGUGUUAAUUUCC
.........(((....)))....(((((.((((......((((..(((((....)))))))))..(((((.---...)))))...)))).))))). ( -24.00)
>consensus
AAAACAAAAGACGGCGGUCGAGAUAAAUAAACGAAAUAAGUUUUAGGGCCUAGUGGCCCAAACAAGAGCUA___GGUGGUUCAGGUGUUAAUUUCC
.........(((....)))(((((.((((..........((((..(((((....)))))))))..((((((.....))))))...)))).))))). (-21.24 = -22.08 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:04 2006