| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,316,067 – 8,316,172 |
| Length | 105 |
| Max. P | 0.506748 |
| Location | 8,316,067 – 8,316,172 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.38 |
| Mean single sequence MFE | -35.93 |
| Consensus MFE | -30.76 |
| Energy contribution | -31.02 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8316067 105 - 23771897 CAUUUGGUGUAGGCGGUUAUGUUCACAUGUUCCUGCUUAGUCGGCGUCACCAAAUCGUGACCACUAUCACUCAUCGAAGGGUGAUCCGCCUGCAGCAGGAACUGG ......((((..(((....)))..))))(((((((((..((.((((((((......)))))....(((((((......)))))))..))).)))))))))))... ( -40.20) >DroSec_CAF1 34238 105 - 1 CAUUUGGUGUAGGCGGUUAUGUUCACAUGUUCCUGCUUAGUCGGCGUCACCAGAUCGUGACCACUAUCGCUCAUCGAAGGGUGAUCUGCCUGCAGCAGGAACUGG ......((((..(((....)))..))))(((((((((..((.((((((((......)))))....(((((((......)))))))..))).)))))))))))... ( -39.50) >DroSim_CAF1 21009 105 - 1 CAUUUGGUGUAGGCGGUUAUGUUCACAUGUUCCUGCUUAGUCGGCGUCACCAGAUCGUGACCACUAUCGCUCAUCGAAGGGUGAUCCGCCUGCAGCAGGAACUGA ......((((..(((....)))..))))((((((((((((.(((.((((((...((((((.(......).))).)))..))))))))).))).)))))))))... ( -41.00) >DroEre_CAF1 21587 105 - 1 CAUUUGGUGUAGGCGCUUAUGUUCACAUGUUCUUGCUUAGUCGGCGUCACCAGAUCGUGCCCACUAUCGCUCAUUGAAGGAUGAUCCGCCUGCAGCAGGAACUGG ..((((.((((((((.((((.((((.(((.....((.((((.((((.(........))))).))))..)).))))))).).)))..)))))))).))))...... ( -30.40) >DroYak_CAF1 21792 105 - 1 CAUUUGGUGUAGGCGGUUAUGUUCACAUGUUCUUGCUUUGUCGGCGUCACCAGAUCGUGACCACUGUCGCUCAUUGAAGGAUGAUCCGCCUGCAGCAGGAACUGG ..((((.(((((((((..(((....)))((((((.(..((.(((((((((......)))))....))))..))..)))))))...))))))))).))))...... ( -35.00) >DroPer_CAF1 24360 99 - 1 CAUUUGGUGUAGGCAGUUAUAUUCACAUAGUCUUGCUUUGAGGGCGUCAUCAGAUCGAGGU---UAUCACUGU---GCGGGUGGUCCGUCUGCAGCUGGAACUGG ..((..((((((((.(...(((((.((((((...(((((((...(.......).)))))))---....)))))---).)))))..).))))))).)..))..... ( -29.50) >consensus CAUUUGGUGUAGGCGGUUAUGUUCACAUGUUCCUGCUUAGUCGGCGUCACCAGAUCGUGACCACUAUCGCUCAUCGAAGGGUGAUCCGCCUGCAGCAGGAACUGG ......((((..(((....)))..))))(((((((((..((.((((((((......)))))....(((((((......)))))))..))).)))))))))))... (-30.76 = -31.02 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:01 2006