Locus 2919

Sequence ID 3L_DroMel_CAF1
Location 8,310,753 – 8,310,845
Length 92
Max. P 0.867970
window4556

overview

Window 6

Location 8,310,753 – 8,310,845
Length 92
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 83.76
Mean single sequence MFE -13.80
Consensus MFE -9.70
Energy contribution -9.50
Covariance contribution -0.20
Combinations/Pair 1.18
Mean z-score -2.16
Structure conservation index 0.70
SVM decision value 0.86
SVM RNA-class probability 0.867970
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8310753 92 - 23771897
CCUU--UUCCACUUCGUUCACCACCAAAUCACUUGGUUUCU------UAAAUAUCACUCGAUCCUCAGAUCGUUUUGCUGUAUCCUUUAGGAUAUUUUUU
....--................(((((.....)))))....------...........(((((....))))).......((((((....))))))..... ( -13.10)
>DroSec_CAF1 17031 90 - 1
CAUU--UUCCACUUGAUUCACCACCAAAUCACUUGUGUUUU------UAAAUAUCACUCGACCCUCAGAUCGUUUUGAUGUAUCCUUUAGGAUAUG--UU
....--...(((.(((((........)))))...)))....------.....((((..(((........)))...))))((((((....)))))).--.. ( -12.60)
>DroSim_CAF1 15669 90 - 1
CAUU--UUCCACUUGAUUCACCACCAAAUCACUUGUGUUUU------UAAAUAUCACUCGAUCCUCAGAUCGUUUUGUUGUAUCCUUUAGGAUAUG--UU
....--...(((.(((((........)))))...)))....------..((((.....(((((....)))))...))))((((((....)))))).--.. ( -14.50)
>DroEre_CAF1 16283 88 - 1
CAUUUUUUCCACU----UCACCACCAAAUCACUUGGCUGUU------UAAAUAUCACUUGAUCCUCAGAUCGUUUUGCAGUAUCCUUAAGGAUACA--UU
.............----....((((((.....)))).))..------............((((....))))........((((((....)))))).--.. ( -13.90)
>DroYak_CAF1 16378 92 - 1
CAUU--UUCCACU----UCACCACCAAAUCACUUGGAUAUAAAUCCAUUAAUAUCACUUGAUCCUCAGAUCGUUCUGCAGUAUCCUUGAGGAUAUA--UU
....--.......----................(((((....)))))...(((((.((((((.((((((....)))).)).)))...)))))))).--.. ( -14.90)
>consensus
CAUU__UUCCACUU__UUCACCACCAAAUCACUUGGGUUUU______UAAAUAUCACUCGAUCCUCAGAUCGUUUUGCUGUAUCCUUUAGGAUAUA__UU
..........................................................(((((....))))).......((((((....))))))..... ( -9.70 =  -9.50 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:00 2006