Locus 2918

Sequence ID 3L_DroMel_CAF1
Location 8,310,007 – 8,310,097
Length 90
Max. P 0.928998
window4555

overview

Window 5

Location 8,310,007 – 8,310,097
Length 90
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 82.44
Mean single sequence MFE -22.25
Consensus MFE -19.75
Energy contribution -19.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.89
SVM decision value 1.19
SVM RNA-class probability 0.928998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8310007 90 - 23771897
CGAUGGCGUUGAUAAGUCGUCAUCAAUGUGGCUGAUCGGCAGUUGCAACAUUGCAACAAAACCCCAUCCCCCCAAUCCAUCUCUCCCA----CC
.(((((.((((((.(((((.((....))))))).)))))).((((((....))))))...................))))).......----.. ( -24.80)
>DroSec_CAF1 16321 72 - 1
CGAUGGCGUUGAUAAGUCGUCAUCGAUGUGGCUGAUCGGCAGUUGCAACAUUGCAACAAAACCCC----CC--------------CCA----AC
((((((((.........)))))))).....(((....))).((((((....))))))........----..--------------...----.. ( -20.70)
>DroSim_CAF1 14939 73 - 1
CGAUGGCGUUGAUAAGUCGUCAUCGAUGUGGCUGAUCGGCAGUUGCAACAUUGCAACAAAACCCC----CC-------------UCCA----GC
((((((((.........)))))))).....(((....))).((((((....))))))........----..-------------....----.. ( -20.70)
>DroYak_CAF1 15572 77 - 1
CGAUGGCGUUGAUAAGUCGUCAUCGAUGUGGCUGAUCGGCAGUUGCAACAUUGCAACAUCUCUCC----CC-------------UCCACCAACC
((((((((.........))))))))..((((((....))).((((((....))))))........----..-------------..)))..... ( -22.80)
>consensus
CGAUGGCGUUGAUAAGUCGUCAUCGAUGUGGCUGAUCGGCAGUUGCAACAUUGCAACAAAACCCC____CC_____________UCCA____CC
...(((.((((((.(((((.((....))))))).)))))).((((((....))))))............................)))...... (-19.75 = -19.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:59 2006