Locus 2917

Sequence ID 3L_DroMel_CAF1
Location 8,308,995 – 8,309,094
Length 99
Max. P 0.951892
window4554

overview

Window 4

Location 8,308,995 – 8,309,094
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 90.07
Mean single sequence MFE -26.07
Consensus MFE -24.95
Energy contribution -25.57
Covariance contribution 0.62
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.96
SVM decision value 1.42
SVM RNA-class probability 0.951892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8308995 99 - 23771897
ACCACUUUGCAUAGCCCCGAUUCACAAGCUCUUUUUUGGCAGAUCAGCCAUGGAUCCAUGGAUCCGUGGAUUCAAUCUGGUCAAAACGAAACGAGUGUC
..((((..((...))..((.(((....(((.......))).((((((...((((((((((....))))))))))..)))))).....))).)))))).. ( -28.40)
>DroSec_CAF1 15313 99 - 1
ACCACUUUGCAUAGCCCCGAUUCACAAGCUCUUUUUUGGCAGAUCAGCAAUGGAUCCAUGGAUCCAUGGAUUCAAUCUGGUCAAAACGAAACGAGUGAC
..((((..((...))..((.(((....(((.......))).((((((...((((((((((....))))))))))..)))))).....))).)))))).. ( -29.30)
>DroSim_CAF1 13949 99 - 1
ACCACUUUGCAUAGCCCCGAUUCACAAGCUCUUUUUUGGCAGAUCAGCCAUGGAUCCAUGGAUCCAUGGAUUCAAUCUGGUCAAAACGAAACGAGUGAC
..((((..((...))..((.(((....(((.......))).((((((...((((((((((....))))))))))..)))))).....))).)))))).. ( -29.30)
>DroEre_CAF1 14580 87 - 1
ACCACUUUGCAUAGCCCCGAUUCACAAGCUCC-UUUUGGCAGAUCAGCCAUGGAUCG-----------AAUCCAAUGUGGUCAAAACGAAACGAGUGAC
..(((((.((...))...(((.((((......-...((((......))))(((((..-----------.))))).)))))))..........))))).. ( -17.30)
>consensus
ACCACUUUGCAUAGCCCCGAUUCACAAGCUCUUUUUUGGCAGAUCAGCCAUGGAUCCAUGGAUCCAUGGAUUCAAUCUGGUCAAAACGAAACGAGUGAC
..((((..((...))..((.(((....(((.......))).((((((...((((((((((....))))))))))..)))))).....))).)))))).. (-24.95 = -25.57 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:58 2006