| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,307,096 – 8,307,194 |
| Length | 98 |
| Max. P | 0.899350 |
| Location | 8,307,096 – 8,307,194 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -22.83 |
| Consensus MFE | -13.94 |
| Energy contribution | -14.08 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8307096 98 - 23771897 GA--GAAAU------GUGCGUGGUCAAAAGGAAAAUGGCAGAGAAAUAUACGGCUAAUUGCCAGCGCACAUUGAACUUUAAAGUGCAAAAGCAAAUGGA-AAAGCAA----- ..--..(((------((((((.((((.........))))............(((.....))).)))))))))....(((....(((....)))....))-)......----- ( -22.40) >DroPse_CAF1 15104 109 - 1 AACUGAAAUAUGCGUGUGUGUGGCCAAGAGGAAAAUGGCAA--AAAUAUUCCGCUAAUUGCCAGCGCACAUUGAACUUAAAAACGCAACUGCAACGUUA-GCAGCAACAUCA ....((....((((((((((((((..((.((((.((.....--..)).)))).))....)))).))))).((........))))))).((((.......-)))).....)). ( -25.20) >DroSec_CAF1 13437 98 - 1 GA--GAAAU------GUGCGUGGUCAAAAGGAAAAUGGCAGAGAAAUAUAUGGCUAAUUGCCAGCGCGCAUUGAACUUUAAAGUGUAAAAGCCAAUGGA-AAAGCAA----- ((--(.(((------((((((.((((.........))))...........((((.....)))))))))))))...))).....(((.....((...)).-...))).----- ( -20.60) >DroSim_CAF1 12076 98 - 1 GA--GAAAU------GUGCGUGGUCAAAAGGAAAAUGGCAGAGAAAUAUAUGGCUAAUUGCCAGCGCACAUUGAACUUUAAAGUGCAAAAGCAAAUGGA-AAAGCAA----- ..--..(((------((((((.((((.........))))...........((((.....)))))))))))))....(((....(((....)))....))-)......----- ( -23.10) >DroEre_CAF1 12615 97 - 1 GA--GAAAU------GUGCGUGGCCAAAAGGAAAAUGAGAGAGAAAUACAUGGCUAAUUGCCAGCGCACAUUGAACUUUAAAGUGCAAAAACAAACG--GACAACGA----- ((--(.(((------((((((..((....))...................((((.....)))))))))))))...)))....((......))...((--.....)).----- ( -20.50) >DroPer_CAF1 14209 109 - 1 AACUGAAAUAUGCGUGUGUGUGGCCAAGAGGAAAAUGGCAG--AAAUAUUCCGCUAAUUGCCAGCGCACAUUGAACUUAAAAACGCAACUGCAACGUUA-GCAGCAACAUCA ....((....((((((((((((((..((.((((.((.....--..)).)))).))....)))).))))).((........))))))).((((.......-)))).....)). ( -25.20) >consensus GA__GAAAU______GUGCGUGGCCAAAAGGAAAAUGGCAGAGAAAUAUACGGCUAAUUGCCAGCGCACAUUGAACUUUAAAGUGCAAAAGCAAAUGGA_AAAGCAA_____ ...............((((((.((((.........))))............(((.....))).))))))........................................... (-13.94 = -14.08 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:55 2006