Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,303,657 – 8,303,752 |
Length | 95 |
Max. P | 0.919360 |
Location | 8,303,657 – 8,303,752 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 73.66 |
Mean single sequence MFE | -38.07 |
Consensus MFE | -25.19 |
Energy contribution | -24.58 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.36 |
Mean z-score | -1.53 |
Structure conservation index | 0.66 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8303657 95 - 23771897 -----CCUUAGU------------UGGUUCCUUGCCCUGGAUAACAUCGAGCACCGCUGGUUUAAGCACAUCCUUGGUCACAUCGAUGUGGUUUAGGUCGAGGCCAUGUUGC -----.......------------(((..(((((.(((((((.(((((((..((((..((...........)).))))....))))))).))))))).))))))))...... ( -30.80) >DroPse_CAF1 11461 112 - 1 UCCCUCUUUGGUCUUGUUGUUUAGGGGGGCCUUGCCCUGGACCACGUCGAGUACGGCAGGCUUAAGGACAUCUUUGGCGACGUCGAUGUGGUUCAGGUCGAGACCAUGCUGC ........((((((((..((..(((....))).))(((((((((((((((((.((.((((............)))).)))).))))))))))))))).))))))))...... ( -44.30) >DroEre_CAF1 9073 95 - 1 -----CUUUGGC------------UGGGUCCUUGCCCUGGAUCACAUCGAGCACCGCCGGCUUCAGCACAUCCUUGGUCACAUCGAUGUGGUUUAGGUCGAGACCAUGCUGU -----....(((------------..((((.(((.(((((((((((((((..((((...((....)).......))))....))))))))))))))).)))))))..))).. ( -37.90) >DroYak_CAF1 9156 95 - 1 -----CCUUGGC------------UGGGUCCUUGCCCUGGAUUACAUCGAGCACCGCCGGCUUUAGCACAUCCUUGGUCACAUCGAUGUGGUUUAGGUCGAGACCAUGCUGU -----....(((------------..((((.(((.(((((((((((((((..((((...((....)).......))))....))))))))))))))).)))))))..))).. ( -35.80) >DroMoj_CAF1 14007 112 - 1 ACUGCCAUUGGGCUGGCUUACUAGGGGUGCCUUGCCAUUGAUGAUGUCGAGCACAGCUGGCUGCAGCACAUCCUGUUCGACAUUGAUGUGAUUCAAGUCCAGGCCAUGCUGC ...(((((((.(((((((((.(((.(((.....))).))).))).))).))).))).)))).((((((...((((...(((.((((......)))))))))))...)))))) ( -36.70) >DroPer_CAF1 10561 112 - 1 UCCCUCUUUGGUCUUGUUGUUUAGGGGGGCCUUGCCCUGGACCACGUCGAGAACGGCAGGCUUUAGGACAUCUUUGGCGACGUCGAUGUGGUUCAGGUCGAGACCAUGCUGC ........((((((((..((..(((....))).))(((((((((((((((...((....(((..((.....))..)))..))))))))))))))))).))))))))...... ( -42.90) >consensus _____CUUUGGU____________GGGGGCCUUGCCCUGGAUCACAUCGAGCACCGCAGGCUUAAGCACAUCCUUGGCCACAUCGAUGUGGUUCAGGUCGAGACCAUGCUGC .........................((...((((.(((((((((((((((.....((.((...........))...))....))))))))))))))).)))).))....... (-25.19 = -24.58 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:54 2006