Locus 2913

Sequence ID 3L_DroMel_CAF1
Location 8,300,270 – 8,300,361
Length 91
Max. P 0.566441
window4549

overview

Window 9

Location 8,300,270 – 8,300,361
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 81.88
Mean single sequence MFE -23.02
Consensus MFE -17.08
Energy contribution -17.05
Covariance contribution -0.03
Combinations/Pair 1.20
Mean z-score -1.34
Structure conservation index 0.74
SVM decision value 0.07
SVM RNA-class probability 0.566441
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8300270 91 - 23771897
GAUCA--UUUGUGGUUAUUAACCAAUUGAAAACUCACCCUUCACCACAUCGCCGUCGCGCUCCUCGGCCUGCGACUUGAUGUCGCCGGUGUGG
..(((--....((((.....))))..)))..............(((((((((((..........))))..(((((.....))))).))))))) ( -28.10)
>DroSec_CAF1 6759 91 - 1
UAUCA--UUUGUGGUUAUUAACCCAUUGAAAACUCACCCUUCACCACAUCACCGUCGCGCUCCUCGGCCUGCGACUUGAUGUCGCCGGUGUGG
..(((--..((.(((.....))))).)))........((..((((((((((..((((((((....)))..))))).))))))....)))).)) ( -24.60)
>DroSim_CAF1 5415 91 - 1
CAUCA--CUUGUGGUUAUUAACCCAUUGAAAACUCACCCUUCACCACAUCACCGUCGCGCUCCUCGGCCUGUGACUUGAUGUCGCCGGUGUGG
..(((--..((.(((.....))))).)))........((..((((((((((..((((((((....)))..))))).))))))....)))).)) ( -22.60)
>DroEre_CAF1 5526 76 - 1
-----------------AUGAUCCAUUGGAAACUCACCCUUCACCACAUCACCGUCGCGCUCCUCGGCCUGCGAUUUGAUGUCGCCGGUAUGG
-----------------.....((((.(....).........(((((((((..((((((((....)))..))))).))))))....))))))) ( -17.70)
>DroYak_CAF1 5569 91 - 1
UAUCA--AUUGUGGUAAAUAACCCAUUGAUAACUCACCCUUCACCACAUCACCGUCGCGCUCCUCGGCCUGCGACUUGAUGUCGCCGGUGUGG
(((((--((.(.(((.....)))))))))))......((..((((((((((..((((((((....)))..))))).))))))....)))).)) ( -27.80)
>DroAna_CAF1 10522 86 - 1
UGCCAGCUUUA-------UGCUGCUUUAUAUACUCACCCUUCACAACAUCACCGUCACGCUCCUCAGCCUGCGACUUGAUGUCUCCAGUGUGG
.((.(((....-------.)))))..........(((.((.....((((((.((.((.(((....))).))))...))))))....)).))). ( -17.30)
>consensus
UAUCA__UUUGUGGUUAUUAACCCAUUGAAAACUCACCCUUCACCACAUCACCGUCGCGCUCCUCGGCCUGCGACUUGAUGUCGCCGGUGUGG
.....................................((..((((((((((..((((((((....)))..))))).))))))....)))).)) (-17.08 = -17.05 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:53 2006