Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,293,529 – 8,293,646 |
Length | 117 |
Max. P | 0.890950 |
Location | 8,293,529 – 8,293,646 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -31.55 |
Consensus MFE | -22.46 |
Energy contribution | -23.28 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.08 |
Mean z-score | -2.14 |
Structure conservation index | 0.71 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8293529 117 - 23771897 ACAAA--UGCGAGUGUA-UAUAGUAUAGCUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUUUAGUGGUGGCACGCAACAAAUGUGUCAAUGCA .....--((((((((((-(...))))).)))....(((((..(((((((.((.((((((..((((.....))))..)))))).))..)))))))..))(((((.....)))))))).))) ( -28.90) >DroSim_CAF1 15008 115 - 1 AUA----CGAGUGUGUA-UAUAGUAUAGCUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGGGGCUUUUAGUGGUGGCACGCAACAAAUGUGUCACUGCA ..(----(((((((((.-..((((.(((((.......)))))..)))).(........)))))).)))))..((((.....)))).....(..((((((((.......))))))))..). ( -35.00) >DroEre_CAF1 15475 100 - 1 GCC-------------ACUA---UAUAACUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUU----AGUGACACGCAACAAAUGUGUCACUGCA (((-------------((((---..............((((((..((((.....))))...))))))...........)))))))..(----(((((((((.......)))))))))).. ( -30.81) >DroYak_CAF1 14991 116 - 1 GCACAUAUAUGUAUAUACUAUAGUAUAACUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUU----AGUGGCACGCAACAAAUGUGUCACUGCA ((((((((.(((.(((((....)))))...........(((((((((((.((.((((((..((((.....))))..)))))).)).))----))))))).)).))).))))))....)). ( -31.50) >consensus ACA____UG_GUGUGUA_UAUAGUAUAACUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUU____AGUGGCACGCAACAAAUGUGUCACUGCA .....................................((((((..((((.....))))...)))))).....((((....).))).....(((((((((((.......))))))))))). (-22.46 = -23.28 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:48 2006