Locus 2907

Sequence ID 3L_DroMel_CAF1
Location 8,292,060 – 8,292,162
Length 102
Max. P 0.715230
window4538

overview

Window 8

Location 8,292,060 – 8,292,162
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.18
Mean single sequence MFE -30.60
Consensus MFE -19.16
Energy contribution -19.68
Covariance contribution 0.52
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.63
SVM decision value 0.39
SVM RNA-class probability 0.715230
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8292060 102 - 23771897
UUCCUCGUUAUUCGCUCGGUAUUUAUCUGGCCAAAAGGCAAAUUAGUCAAAUGGUAACAAUUAUAUAAUGGUCGAGUUAUACUUGGCCACUUGG------------------CGAGAAGU
...(((((((...(((.(((((...((.(((((...(((......)))...((....)).........)))))))...))))).)))....)))------------------)))).... ( -26.40)
>DroSec_CAF1 17998 102 - 1
UUCCUUGCUAUUCGCUCGCCAUUUAUCUGGCCAAAAGGCAAAUUAGUCAAAUGGUAACAAUUAUAUAAUGGUCAAGUUAUACUUGGCCACUUGG------------------CGAGAAGU
......(((.((((((.(((((((..((((((....)))....)))..))))))).............((((((((.....))))))))...))------------------)))).))) ( -31.60)
>DroSim_CAF1 13520 102 - 1
UUCCUCGCUAUUCGCUCGCCAUUUAUCUGGCCAAAAGGCAAAUUAGUCAAAUGGUAACAAUUAUAUAAUGGUCAAGUUAUACUUGGCCACUUGG------------------CGAGAAGU
...(((((((.......(((((((..((((((....)))....)))..))))))).............((((((((.....))))))))..)))------------------)))).... ( -33.40)
>DroEre_CAF1 13874 112 - 1
UUCCUCGUUAUUCGCUCGG-UUUUAUCUGGCCAG-AGGCAAAUUAGUCAAAUGGUAACAAUUAUAUAAUGGUCUAGUUAUACUUGGCAACUUGGC------GAGUAUCCCGGCGAGAAGU
...(((((((((((((.((-((.......((((.-.(((......)))...))))...............(((.((.....)).))))))).)))------))))).....))))).... ( -27.90)
>DroYak_CAF1 13400 116 - 1
---CUCGUUAUUCGCUCGACUUUUAUCUGGCCAG-AGGCAAAUUAGUCAAAUGGUAACAAUUAUGUAAUGGUCUAGUUAUACUUGGCCACUUGGCCAGUUGGAGUAUCCCGGCGAGAAGU
---.......((((((..(((((...((((((((-.(((......)))....................(((((.((.....)).))))).))))))))..))))).....)))))).... ( -33.70)
>consensus
UUCCUCGUUAUUCGCUCGCCAUUUAUCUGGCCAAAAGGCAAAUUAGUCAAAUGGUAACAAUUAUAUAAUGGUCAAGUUAUACUUGGCCACUUGG__________________CGAGAAGU
..............((((...........((((...(((......)))...)))).............((((((((.....)))))))).......................)))).... (-19.16 = -19.68 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:42 2006