Locus 2904

Sequence ID 3L_DroMel_CAF1
Location 8,289,947 – 8,290,064
Length 117
Max. P 0.950933
window4533

overview

Window 3

Location 8,289,947 – 8,290,064
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 95.21
Mean single sequence MFE -31.10
Consensus MFE -28.34
Energy contribution -27.98
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.91
SVM decision value 1.41
SVM RNA-class probability 0.950933
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8289947 117 - 23771897
UUAAUUGCUAUAUUUAAAUUCUAAAUUUGGAGCUCUGGCCAAGUGCGCUGUCUAGUUGUGCAAGUGACACGGUCAGCGUCUAUUUGGACCUGCAAAUCUAAUAUAUGCAUGGCUAUA
.....(((((((((.....((((....))))((...((((((((((((((.((.((..(....)..))..)).))))))..)))))).)).))......)))))).)))........ ( -29.30)
>DroSec_CAF1 15844 117 - 1
UUAAUUGCUAUAUUUAAAUUCUAAAUUUGGAGCCCUGGCCAAGUGCGCUGUCUAGUUGUGCAAGUGACACGGUCAGUGUCCAUUUGGACCUGCAAAUCUAAGCUAUGCAUGGCUAUA
......(((..(((((.....)))))....)))..((((((..((((..(..(((...(((((.((((...)))).)((((....)))).))))...)))..)..)))))))))).. ( -31.00)
>DroSim_CAF1 11363 117 - 1
UUAAUUGCUAUAUUUAAAUUCUAAAUUUGGAGCUCUGGCCAAGUGCGCUGUCUAGUUGUGCAAGUGACACGGUCAGUGUCCAUUUGGACCUGCAAAUCUAAGCUAUGCAUGGCUAUA
......(((..(((((.....)))))....)))..((((((..((((..(..(((...(((((.((((...)))).)((((....)))).))))...)))..)..)))))))))).. ( -31.40)
>DroEre_CAF1 11694 117 - 1
UUAAUUGCUAUAUUUAAAUUCUAAAUUUGGAGCUCUGGCCAAGUGCGCUGUCUAGUUGUGCAAGUGACACGGUCAGCGUUCAUUUGGACCUGCAAAUCUAACAAAUGCAUGGCAAUA
...((((((((.(((((((.....)))))))((...((((((((((((((.((.((..(....)..))..)).)))))..))))))).)).))...............)))))))). ( -33.30)
>DroYak_CAF1 11176 117 - 1
UUAAUUGCUAUAUUUAAAUUCUAAAUUUGGAGCUCUGGCCAAGUGCGCUGUCUAGUUGUGCAAGUGACACGGUCAGCGUCCAUUUGGACCUGUAAAUCUAACUUAUGUACGGCAAUA
...(((((..(((.(((..((((....))))((...((((((((((((((.((.((..(....)..))..)).)))))..))))))).)).)).........))).)))..))))). ( -30.50)
>consensus
UUAAUUGCUAUAUUUAAAUUCUAAAUUUGGAGCUCUGGCCAAGUGCGCUGUCUAGUUGUGCAAGUGACACGGUCAGCGUCCAUUUGGACCUGCAAAUCUAACAUAUGCAUGGCUAUA
......(((((.(((((((.....)))))))((...((((((((((((((.((.((..(....)..))..)).)))))..))))))).)).))...............))))).... (-28.34 = -27.98 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:37 2006