Locus 2903

Sequence ID 3L_DroMel_CAF1
Location 8,289,223 – 8,289,331
Length 108
Max. P 0.988931
window4532

overview

Window 2

Location 8,289,223 – 8,289,331
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 90.33
Mean single sequence MFE -32.84
Consensus MFE -27.32
Energy contribution -27.80
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.83
SVM decision value 2.14
SVM RNA-class probability 0.988931
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8289223 108 - 23771897
CGCGCCAAAGCAAUUAAUCAAUUAAUUGUGCAGCGGGCGCGAUUACCCGGCUAAAUCGCGCAGCAGCACGCCGGUUUCUGCUCCGGCUUCCCCCUCCCCCGCAAAAAA
...((....((((((((....)))))))))).((((((((((((.........))))))))........(((((........)))))...........))))...... ( -35.30)
>DroSec_CAF1 10640 106 - 1
CGCGCCAAAGCAAUUAAUCAAUUAAUUGUGCAGCGUGCGCGAUUACCCGGCUAAAUCGCGCAGCAGCACGCCGGUUUCUGCUCCGGCUUCCCCCUCC-CCACAAA-AA
.((......))((((((....))))))((((.((.(((((((((.........))))))))))).))))(((((........)))))..........-.......-.. ( -34.50)
>DroSim_CAF1 10635 107 - 1
CGCGCCAAAGCAAUUAAUCAAUUAAUUGUACAGCGGGCGCGAUUACCCGGCUAAAUCGCGCAGCAGCACGCCGGUUUCUGCUCCGGCUUCCCCCUCCCCCACAAA-AA
.((......((((((((....))))))))...((..((((((((.........)))))))).)).))..(((((........)))))..................-.. ( -32.40)
>DroEre_CAF1 10907 100 - 1
CGCGCUUAAGCAAUUAAUCAAUUAAUUGUUCAGCGGGCGCGAUUCCCCGGCUAGAUCGCCGAGUAGCACGCCGGUUUCUGCUCCGGCUUCCCCC-------CAAA-AA
(((((((.(((((((((....)))))))))....)))))))......((((......))))........(((((........))))).......-------....-.. ( -31.90)
>DroYak_CAF1 10564 99 - 1
CGCGUUAAAGCAAUUAAUCAAUUAAUUGUGCAGCGGGCGCGAUUCCCCGGCUAAAUCGCCGAGCAGCACGCCGGUUUCUGCUCCGGCUUCCC-C-------CAAA-AA
.((......))((((((....))))))((((.(((((.......)))((((......)))).)).))))(((((........))))).....-.-------....-.. ( -30.10)
>consensus
CGCGCCAAAGCAAUUAAUCAAUUAAUUGUGCAGCGGGCGCGAUUACCCGGCUAAAUCGCGCAGCAGCACGCCGGUUUCUGCUCCGGCUUCCCCCUCC_CC_CAAA_AA
.((((....((((((((....))))))))...))..((((((((.........))))))))....))..(((((........)))))..................... (-27.32 = -27.80 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:36 2006