| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,288,472 – 8,288,583 |
| Length | 111 |
| Max. P | 0.541681 |
| Location | 8,288,472 – 8,288,583 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -52.89 |
| Consensus MFE | -30.24 |
| Energy contribution | -33.05 |
| Covariance contribution | 2.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8288472 111 + 23771897 CA---CCGGAA-UUCCGUUCG--CCGGGUUCCCCGGAGCCUGGCCCUGCGGCUCCAUCUGCGGAGGGCGUUCCACCGCCCCCGCCACCUGAGGCGGCCGAUUCGGUGGGACCGCCUA ..---.(((..-..)))...(--((((((((....)))))))))...((((..(((((..(((.(((((......)))))(((((......))))))))....)))))..))))... ( -58.90) >DroSec_CAF1 9804 111 + 1 CU---CCGGAA-UUCCGUUCC--CCGGGUUCCCCGGAGCCUGGCCCUGCGGCUCCAUCUGCGGAAGGCGUUCCACCGCCACCGCCGCCUGAGGCGGCCGAUUCGGUGGGACCGCCUA ..---.(((..-..)))....--((((((((....))))))))..((((((......)))))).(((((((((((((...(.((((((...)))))).)...)))))))).))))). ( -57.50) >DroEre_CAF1 10141 111 + 1 CA---CCGGAA-UUCCUUUCG--CCGGUUUCUCCGGAGCCAGGUCCUGCGGCUCCAUCUGCGGAGGGAGUUCCACCGCCCCCGCCACCUGAGGCGGCCGCUUCGGUGGGACCGCCUA ..---..((((-(((((((((--(.((.....))((((((.........))))))....)))))))))))))).................((((((((((....))))..)))))). ( -55.30) >DroWil_CAF1 16082 117 + 1 CACUACCGGCACCGCCGCUUGAGGCAGAAUCCCCUGAACCGGGGCCGGCUGAGCCAUCUGCGGUGGGUGUGCCACCACCGCCGCCGCCAGAGGCAGCUGCCUCUGAGGGUCCACCGA .....(((((...(((......)))......(((......))))))))..((.((....((((((((.(((....)))).)))))))(((((((....))))))).)).))...... ( -53.40) >DroYak_CAF1 9749 111 + 1 CA---CCGGAA-UUCCGUUCG--CCGAUAUCCCCGGAGCCUGGUCCAGCGGCUCCAUCUGCGGAGGGCGUUCCACCGCCCCCGCCACCUGAGGCGGCCGCUUCGGUGGGACCGCCUA ..---.(((..-..)))((((--(.(((......((((((.........))))))))).)))))((((((((((((((..(((((......)))))..))...))))))).))))). ( -51.10) >DroAna_CAF1 9462 111 + 1 CG---CCUG---UUCCGCUUGAAGCCGAUUCCCCCGAGCCGGGACCGGCAGCUCCGUCCGCUGAAGGCGUACCGCCACCCCCACCUCCUGAUGCGGCCGCCUCCGUGGGCCCGCCUA .(---((.(---(((((((((.............)))).)))))).))).((...((((((.((.((((..((((.................)))).)))))).))))))..))... ( -41.15) >consensus CA___CCGGAA_UUCCGUUCG__CCGGAUUCCCCGGAGCCUGGCCCUGCGGCUCCAUCUGCGGAGGGCGUUCCACCGCCCCCGCCACCUGAGGCGGCCGCUUCGGUGGGACCGCCUA ............((((((.......((.....))((((((.........))))))....))))))((((((((((((...(((((......)))))......)))))))).)))).. (-30.24 = -33.05 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:35 2006