| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,285,749 – 8,285,865 |
| Length | 116 |
| Max. P | 0.529748 |
| Location | 8,285,749 – 8,285,865 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -46.13 |
| Consensus MFE | -24.21 |
| Energy contribution | -24.72 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.52 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8285749 116 + 23771897 AUCGCGUUCCCGCUCCCGAGAUCGCUCGCGGUACCUGGACGUGGAACGCUCACGUCGCUGUCGGCUGCGAUGAGAUCGCUCCCUCGACCGCGACCUUUCGCGCCUAUUGUAGCUCU ...(((((((((.(((.(..((((....))))..).))))).)))))))....(((((.(((((..(((((...)))))....))))).))))).....((..(....)..))... ( -43.80) >DroVir_CAF1 6972 116 + 1 AUCACGCUCUCUCUCACGAGAACGUUCUCGAUAGCGUGAAGUUGAUCGCUCACGACGUUGCCUGCUGCGAUGGGAGCGAUCUCGGGAACGCGAACGCUCGCGACGAUUGUAGCUCU .....((((..((((.((((..(((((((((.(((.....)))((((((((....((((((.....)))))).)))))))))))))))))......)))).)).))..).)))... ( -44.30) >DroGri_CAF1 7149 116 + 1 AUCACGCUCUCUUUCGCGGGAGCGCUCUCGAUAGCGUGAAGUCGAUCGCUCGCGACGCUGCCGACUGCGAUGGGAGCGAUCCCGUGAACGCGAACGCUCGCGACGAUUGUAGCUCU .(((((((.((....(((....)))....)).)))))))((((((((((((.((.(((........))).)).)))))))).......(((((....)))))..))))........ ( -47.60) >DroWil_CAF1 12374 116 + 1 AUCACGUUCCCGUUCCCUGGACCGUUCACGGUAGCGUGACGAUGAACGCUCGCGUCUUUGACGACUGCGAUGCGAUCUUUCCCUGGAACGUGAACGCUCGCGACGAUUGUAGCUCU .....((((.((((((..(((.(((.((((....)))))))..((.((((((((((......))).)))).))).))..)))..)))))).))))(((.((((...)))))))... ( -42.40) >DroMoj_CAF1 6963 116 + 1 AUCACGCUCUCGUUCACGGGAACGCUCACGAUAGCGCGAAGUUGAACGCUCACGACGCUGACGACUGCGAUGAGAACGAUCGCGGGAACGCGAACGUUCGCGUCGAUUGUAACUCU .((.((((.((((...((....))...)))).)))).))((((((.(((...((.(((........))).)).(((((.(((((....))))).))))))))))))))........ ( -45.00) >DroAna_CAF1 6943 116 + 1 UUCGCGCUCCCGGUCGCGAGAUCGUUCUCGGUAUCGGGAGGUAGAGCGUUCUCGUCGCUGACGGCUGCGAUGAGACCGCUCCCUAGACCGCGACCUUUCGCGCCUAUUGUAACUCU ...((((....((((((((((....))))......((.(((..(((((.(((((((((........))))))))).))))))))...))))))))....))))............. ( -53.70) >consensus AUCACGCUCCCGUUCACGAGAACGCUCUCGAUAGCGUGAAGUUGAACGCUCACGACGCUGACGACUGCGAUGAGAGCGAUCCCGGGAACGCGAACGCUCGCGACGAUUGUAGCUCU .((.((((.((((...((....))...)))).)))).))....(((((.((.((.(((........))).)).)).))))).......(((((....))))).............. (-24.21 = -24.72 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:34 2006