Locus 2900

Sequence ID 3L_DroMel_CAF1
Location 8,282,416 – 8,282,511
Length 95
Max. P 0.946546
window4529

overview

Window 9

Location 8,282,416 – 8,282,511
Length 95
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 83.04
Mean single sequence MFE -39.42
Consensus MFE -31.60
Energy contribution -30.97
Covariance contribution -0.64
Combinations/Pair 1.22
Mean z-score -3.21
Structure conservation index 0.80
SVM decision value 1.36
SVM RNA-class probability 0.946546
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8282416 95 - 23771897
CU--------C----CUUUUAUUUCCUUCAGUGAGCCCUAUGUGCGCGAGCACCUGUCUAAGGUUUACAUGGUCCUGGGCAGCACUGCCGCUGCCACGGCCAUGGGA
..--------.----........((((...(((((((.((.((((....)))).....)).)))))))((((((...((((((......))))))..)))))))))) ( -38.00)
>DroSec_CAF1 3806 98 - 1
CU--------CC-UCCCUUUAUAUCCUUCAGUGAGCCCUAUGUGCGUGAGCACCUGUAUAAGGUUUACAUGGUCCUGGGCAGCACUGCCGCUGCUACGACCAUGGGA
..--------..-((((.............(((((((.(((((((....))))....))).)))))))((((((...((((((......))))))..)))))))))) ( -41.40)
>DroSim_CAF1 3785 98 - 1
CU--------CC-UCCUUCUAUUUCCUUCAGUGAGCCCUAUGUGCGCGAGCACCUGUAUAAGGUUUACAUGGUCCUGGGCAGCACUGCCGCUGCUACGACCAUGGGA
..--------..-..........((((...(((((((.(((((((....))))....))).)))))))((((((...((((((......))))))..)))))))))) ( -38.40)
>DroEre_CAF1 4026 98 - 1
CU--------CC-UCCUUCUCUUUUUCCUAGUGAGCCUUAUGUGCGCGAGCACCUGUCAAAGGUCUACAUGGUCCUGGGCAGCACUGCCGCUGCCACGGCCAUGGGA
..--------..-............((((((((..((((..((((....))))......))))..))).(((((...((((((......))))))..)))))))))) ( -37.90)
>DroYak_CAF1 3785 104 - 1
CUC--CUCCUCC-UCCUUCUUUAUUCCCCAGUGAGCCCUAUGUGCGUGAGCACCUGUCAAAGGUCUACAUGGUCCUGGGCAGCACUGCCGCUGCCACGGCUAUGGGA
...--.......-.............((((...((((((((((((....))((((.....))))..)))))).....((((((......))))))..)))).)))). ( -38.80)
>DroAna_CAF1 3936 104 - 1
UUCUACUCCCCACCCCUCCUAUUU---CCAGUGAGCCUUAUGUGCGAGAGCACCUGUCCAAGGUGUACAUGGUCCUUGGUAGCACUGCCGCUGCCACGGCGGUGGGA
........((((((((........---((((((.(((((..((((....))))......))))).))).)))....(((((((......))))))).)).)))))). ( -42.00)
>consensus
CU________CC_UCCUUCUAUUUCCUCCAGUGAGCCCUAUGUGCGCGAGCACCUGUCUAAGGUUUACAUGGUCCUGGGCAGCACUGCCGCUGCCACGGCCAUGGGA
..............(((.............(((.(((.((.((((....)))).)).....))).)))((((((...((((((......))))))..))))))))). (-31.60 = -30.97 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:33 2006