Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 109,944 – 110,036 |
Length | 92 |
Max. P | 0.713193 |
Location | 109,944 – 110,036 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -23.16 |
Energy contribution | -23.64 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.09 |
Mean z-score | -1.92 |
Structure conservation index | 0.78 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 109944 92 + 23771897 AGCCAGGUGCAUUGAUUCGUUCUCGGAGAAUUGGCUUAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUUAAAUAGC---CACUCGA .((((((((...(((..(((((.....))).))..)))....)))))))).((.((((((.......................))---)))).)) ( -26.10) >DroSec_CAF1 45565 94 + 1 AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGC-CAUUUUCACCUGGCAUCUAGUGGCCCUGACACACGCCCCAUAAAAUAGCCGCCACUCGA .((((((((...(((...((((.....))))...)-))....)))))))).((.((((((..........................)))))).)) ( -29.87) >DroSim_CAF1 51262 91 + 1 AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGC-CAUUUUCACCUGGCAUCUAGUGGCCCUGACACACGCCCCAUAAAAUAGC---CACUCGA .((((((((...(((...((((.....))))...)-))....)))))))).((.((((((.......................))---)))).)) ( -30.10) >DroEre_CAF1 67837 92 + 1 AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGCCCAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUAAAAUAGC---CACUCGA .((((((((...(((..(((((.....))).))..)))....)))))))).((.((((((.......................))---)))).)) ( -30.90) >DroYak_CAF1 63269 92 + 1 AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGCCCAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUAAAAUAGC---CACUCGA .((((((((...(((..(((((.....))).))..)))....)))))))).((.((((((.......................))---)))).)) ( -30.90) >consensus AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGC_CAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUAAAAUAGC___CACUCGA .((((((((...(((.((((((.....))).))).)))....))))))))...(((.(((..........))))))................... (-23.16 = -23.64 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:16 2006