| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,280,829 – 8,280,919 |
| Length | 90 |
| Max. P | 0.766442 |
| Location | 8,280,829 – 8,280,919 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 80.15 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -18.18 |
| Energy contribution | -18.43 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8280829 90 + 23771897 UCGAGAUCCUGUGGCAGAAUUCCAGCUAUCUUGGAUAUGAAGAACAGUUGCUGGAACUGCUGCAAUAGUGGUUGCACUGCGUCCUCCGCC ..(((....((..((((..(((((((..((((.......))))......)))))))))))..)).(((((....)))))....))).... ( -27.20) >DroSec_CAF1 2149 90 + 1 UCGAGAUCCUGCGGCAGAAUUCCAGCUAUCUUGGAUAUGAAGAACAGUUGAUGGAACUGCCGCAAUAGUGGUUGAACUGCGUUCUCUGCC ..((((...((((((((..((((((((.((((.......))))..)))...)))))))))))))...(..(.....)..)..)))).... ( -28.20) >DroEre_CAF1 2361 90 + 1 UCGAGAUCCUGCGGCAGAAUUCCAGCUAUUUUGGAUAUGAAGAACAGUUGCUGGAACUGCUGCAAUAGUGGUUCAACUGUGUCCUCUGCC ..(((....((((((((..(((((((....(((...........)))..)))))))))))))))(((((......)))))...))).... ( -30.10) >DroYak_CAF1 2139 90 + 1 UCGAGAUCCUGCGGCAGAAUUCCAGCUAUCUUCGAUAUAAAGAAAAGUUGCUGGAACUGCUGCAAUAGCGGUUGAACUGUGUCCUCUGCC ..(((....((((((((..(((((((..(.(((........))).)...)))))))))))))))...((((.....))))...))).... ( -30.50) >DroMoj_CAF1 2265 90 + 1 GCCAAAUCCUGUGGCAAUACGCCCACUAAUUUGGAUAAGAAAAACAGUUGCUGGAAUUGCAGCAACAACGGUUGCACUAUUGGCGUCGGC (((((....((..((.......(((......)))............(((((((......)))))))....))..))...)))))...... ( -25.20) >DroAna_CAF1 2152 90 + 1 UCCAAGUCCUGCGGCAAGAUUCCGGCUAUCUUUGAUAUAAAAAACAACUGCUGGAACUGCUGCAAUAAGGGUUGAACUUCCGGCUCCGAU .....(((.(((((((.(.(((((((....(((........))).....)))))))))))))))....((((((......)))).))))) ( -25.10) >consensus UCGAGAUCCUGCGGCAGAAUUCCAGCUAUCUUGGAUAUGAAGAACAGUUGCUGGAACUGCUGCAAUAGUGGUUGAACUGCGUCCUCCGCC .........((((((((..(((((((.......................)))))))))))))))...((((.....)))).......... (-18.18 = -18.43 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:32 2006