Locus 2898

Sequence ID 3L_DroMel_CAF1
Location 8,279,945 – 8,280,035
Length 90
Max. P 0.919579
window4527

overview

Window 7

Location 8,279,945 – 8,280,035
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -35.48
Consensus MFE -23.48
Energy contribution -26.03
Covariance contribution 2.56
Combinations/Pair 1.19
Mean z-score -2.08
Structure conservation index 0.66
SVM decision value 1.13
SVM RNA-class probability 0.919579
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8279945 90 + 23771897
AUGGACCAUGUUAGUGGCCAGGGGAGGCGGUGGAGGCUUCCUGCUGGCCGCAUCAAUUGCUUCACCAAAGGAGUUCAUGGAGUGGGCCAC-----------------
.(((.((((....(((((((((((((((.......))))))).)))))))).(((...(((((......)))))...))).)))).))).----------------- ( -40.30)
>DroSec_CAF1 1261 90 + 1
AUGAACCAUGUUAGUGGCCAGGGGAGGCGGUGGAGGCUUCCUGCUGGCCGCAUUAAUUGCUUCACCAAAGGAGUUCAUGGAGUGGGCCAC-----------------
.....(((((...(((((((((((((((.......))))))).)))))))).......(((((......))))).)))))..........----------------- ( -36.90)
>DroSim_CAF1 1259 90 + 1
AUGAACCAUGUUAGUGGCCAGGGGAGGCGGUGGAGGCUUCCUGCUGGCCGCAUCAAUUGCUUCACCAAAGGAGUUCAUGGAGUGGGCCAC-----------------
.((..((((....(((((((((((((((.......))))))).)))))))).(((...(((((......)))))...))).))))..)).----------------- ( -38.20)
>DroEre_CAF1 1469 90 + 1
UUGGACCAUGUUAGAGGGCAAGGGAGGCGGUGGAGCCUUCCUGCUGGCCGCAUUAAUUGCUUCGCCAAAGGAGUUCAUGGAGUGGGCCAC-----------------
................((((.(((((((......)))))))))))((((.((((....(((((......)))))......))))))))..----------------- ( -34.60)
>DroWil_CAF1 5305 104 + 1
AUGGGCCAUAUUAACGGUCAUGGGAUUCAUUUGAGGCUUUUGGCCA---GUUUGCACCGAUUCGCCAAAAGAGUUCAUCGAAUGGGCAACUGUAAAAGAAAAGCAAG
...((((........))))((((..(((((((((..((((((((.(---(((......)))).))))))))......)))))))))...)))).............. ( -25.60)
>DroYak_CAF1 1254 90 + 1
AUGGACCAUGUUAGAUGCCAGGGGAGGCGGUGGUGGCUUCCUGCUGGCCGCAUCAAUAGCUUCGCCAAAGGAGUUCAUUGAGUGGGCCAC-----------------
.(((.((.........((((((((((((.......))))))).)))))(((.(((((((((((......)))))).))))))))))))).----------------- ( -37.30)
>consensus
AUGGACCAUGUUAGUGGCCAGGGGAGGCGGUGGAGGCUUCCUGCUGGCCGCAUCAAUUGCUUCACCAAAGGAGUUCAUGGAGUGGGCCAC_________________
.(((.((((....(((((((((((((((.......))))))).)))))))).......(((((......))))).......)))).))).................. (-23.48 = -26.03 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:31 2006