Locus 2896

Sequence ID 3L_DroMel_CAF1
Location 8,277,125 – 8,277,245
Length 120
Max. P 0.899257
window4524

overview

Window 4

Location 8,277,125 – 8,277,245
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.72
Mean single sequence MFE -32.93
Consensus MFE -18.80
Energy contribution -19.67
Covariance contribution 0.87
Combinations/Pair 1.32
Mean z-score -1.78
Structure conservation index 0.57
SVM decision value 1.01
SVM RNA-class probability 0.899257
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8277125 120 + 23771897
AGCGACUACCACAAACGGCUAAAAUGGUAUGGGCACAACCAUACCCCUCAAGAGUAUAGGUUAAUUUGUAGACUCGAUUACUGGUAGUGGCAAUUGUCUGAUUAGACCUGAAUACCUUGC
.((.(((((((..............(((((((......)))))))......((((.((.(......).)).))))......))))))).))....((((....))))............. ( -32.50)
>DroSec_CAF1 12486 117 + 1
AGCGGCUACCACAGA---CUCAAAUGGUAUGGGCACAACCAUACCCCUCAAGAGUAUAGCUUAAUAUGUAGACUCGUUUAGUGGUAGUGGCAACUGUCUGAUUAGACUCGAAUACCUUGC
.((.(((((((((((---(......(((((((......)))))))......((((...((.......))..)))))))).)))))))).))....((((....))))............. ( -39.50)
>DroSim_CAF1 12490 120 + 1
AGCGGCUACCACAGACGGCUGAAAUGGUAUGUGCACAACCAUACCCCUCAAGAGUAUAGCUUAAUAUGUAGACUCGUUUAGUGGUAGUGGCAACUGUCUGAUUAGACUCGAAUACCUUGC
.((.((((((((((((...(((...((((((........))))))..))).((((...((.......))..)))))))).)))))))).))....((((....))))............. ( -36.20)
>DroEre_CAF1 17265 120 + 1
AGCGACUACCAGAGAUGGCCAAAAUGGUGUGGGCACAACCAUACCCCUCAAGAGUGUAGCUCAAUUUGUAGACUCGUCCCCUGGUAGUGGCAAAUGUCUUAUACGAAUCGAAUACCUUGC
.((.((((((((.(((((.......(((((((......)))))))......(((.....)))...........)))))..)))))))).))............................. ( -36.20)
>DroYak_CAF1 12654 120 + 1
AUUGACUACCACAGUCGGCUAAAAUAGUGUGGGCACAACCAUACCCUUCAAGAGUGUAGCUCAGUUUGUAGACUCGUCCACUGGUAGUAGCAAAUUCCUUAUCCGAUCUAAAUACCUUGU
.(((.((((..((((.(((.......((((((......)))))).......((((.((.(.......))).))))))).))))...)))))))........................... ( -26.60)
>DroAna_CAF1 14501 111 + 1
UUCGAGUAUUUCCAACAGCUUUGAUAGUAUGGGCACAUCCGUAACCUUCUCUAACAUAUUUGAGUGUAUAGACUUCUCCUCUGGAGGUGGU--------UACACGA-CUGCCCACUUUUU
.....(((((..(((.....)))..)))))(((((.....((((((...((((((((......)))).))))..(((((...))))).)))--------)))....-.)))))....... ( -26.60)
>consensus
AGCGACUACCACAGACGGCUAAAAUGGUAUGGGCACAACCAUACCCCUCAAGAGUAUAGCUUAAUUUGUAGACUCGUCCACUGGUAGUGGCAAAUGUCUGAUUAGACCCGAAUACCUUGC
.((.(((((((..............(((((((......)))))))......((((.((..........)).))))......))))))).))............................. (-18.80 = -19.67 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:28 2006