| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,276,932 – 8,277,045 |
| Length | 113 |
| Max. P | 0.588266 |
| Location | 8,276,932 – 8,277,045 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.42 |
| Mean single sequence MFE | -32.12 |
| Consensus MFE | -16.01 |
| Energy contribution | -16.73 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8276932 113 - 23771897 GUUAGCAAUAAUUGGCCAUGGUUCGCCAUUCCGCAAC-------AGAAGAAGAAGUCGGCUAAACCGAGAACCACAUUCAUGGUUUGUGCACCACAUUGGGAGCGCGAAAUUAUGAAGGG ((((....))))...((.((((((((......))...-------...........((((.....))))))))))..((((((((((((((.((......)).)))).)))))))))))). ( -32.10) >DroSec_CAF1 12302 104 - 1 GUUAGAAAUAAUUGACCUUGGUUCGCCAUUCCUCAAA-------AGAAGAAGAGGUU---------GAGAACCACAUUUAUGGUUUGUGCCCCACAUUGGGAGCGCGAAAUGAUGAAGGG ((((....))))...(((((((((..((..((((...-------.......)))).)---------).))))).((((.....((((((((((.....))).)))))))..)))))))). ( -33.60) >DroSim_CAF1 12306 104 - 1 GUUAGAAAUAAUUGGCCUUGGUUCGCCAUUCCUCAAA-------AGAAGAAGAGGUU---------GAGAACCACAUUUAUGGUUUGUGCACCACAUUGGGAGCGCGAAAUUAUGAAGGG ((((....))))...((.((((((..((..((((...-------.......)))).)---------).))))))..((((((((((((((.((......)).)))).)))))))))))). ( -29.80) >DroEre_CAF1 17081 104 - 1 ACUCGCGAAAAAUGGGCUUGGUUCGCCAUUCCGCAAA-------AGAAGACGAAG---------CCGAAAUGCACAUUCAUGGUUUGUGCUCCACAUUGGGAGCGCGAAAUUAUGAAGGA ....(((.....(.(((((.(((..(...........-------.)..))).)))---------)).)..)))...(((((((((((((((((......))))))).))))))))))... ( -32.10) >DroYak_CAF1 12461 113 - 1 GUCCGCCAAAACUGGCCUUGGUUUGCCAUUCCGCAAC-------AGAAGAAGAAGUCGGCUAAACCGAAAAGCUCAUUCAUGGUUUGUGCACCACAUUGGGAGCGCGAAAUUAUGAAGGG ..((((((....)))).((((((((((.(((..(...-------....)..)))...))).)))))))........((((((((((((((.((......)).)))).)))))))))))). ( -34.00) >DroAna_CAF1 14311 110 - 1 AUCCGUAAUAAGUGGCCGUGGUUUGCCAUACCACAGAGGUAUCCAGGAGAAAAA----------AAUAAAUUCACUUUUAAGGUUUGUGCACCCACCUGGGAGCGUGAGCGGAUUAAGGA .(((.......((((..((((....)))).))))......(((((((.(((...----------......))).))).....(((..(((.(((....))).)))..)))))))...))) ( -31.10) >consensus GUUAGCAAUAAUUGGCCUUGGUUCGCCAUUCCGCAAA_______AGAAGAAGAAGU________CCGAAAACCACAUUCAUGGUUUGUGCACCACAUUGGGAGCGCGAAAUUAUGAAGGG .............((...(((....)))..))............................................((((((((((((((.((......)).)))).))))))))))... (-16.01 = -16.73 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:27 2006