Locus 2892

Sequence ID 3L_DroMel_CAF1
Location 8,268,076 – 8,268,186
Length 110
Max. P 0.739078
window4519

overview

Window 9

Location 8,268,076 – 8,268,186
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -26.66
Consensus MFE -17.38
Energy contribution -19.34
Covariance contribution 1.96
Combinations/Pair 1.18
Mean z-score -2.76
Structure conservation index 0.65
SVM decision value 0.44
SVM RNA-class probability 0.739078
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8268076 110 - 23771897
ACCGAAAGCUGUACAACUAAUGCUAAAUAUAUGUAAACAUAUAUUUAUCGUUUAAUGUACUGACAUUUUAGGUUACAUCACUCGACUUUUGAGUGAACCCAGUGAACACA
(((((((.(.(((((...((((.((((((((((....)))))))))).))))...))))).)...)))).)))....((((((((...)))))))).............. ( -27.60)
>DroSec_CAF1 3439 110 - 1
ACCGAAAGCUGUACAACUAAUAACUAAUAUAUGUUUACAUAUAUUUAGCGUUUAAUGUACUGACAUUUUAGGUUACAGCACUCGACUUUUGGGUGAACCCAGUGAACACU
..(((..((((((...((((...((((((((((....)))))).)))).....(((((....)))))))))..))))))..)))....(((((....)))))........ ( -27.70)
>DroSim_CAF1 3447 110 - 1
ACCGAAAGCUGUACAACGAAUGCUAAAUAUAUGUAAACAUAUAUUUAGCUUUUAAUGUACUGACAUUUUAGGUUACAGCACUCGACUUUUGGGUGAACCCAGUGAACACU
..(((..((((((....(((.((((((((((((....)))))))))))).)))(((((....)))))......))))))..)))....(((((....)))))........ ( -34.00)
>DroEre_CAF1 3517 109 - 1
ACCGAAAGUUGUACAACUAAUGCUGAAUAAUUGUAAAUAUAUAUUUAGCUUUUAAUGUACUGACAUUAUAGGUUACAUCACUAGACUU-UGGGUGCUCCCAGUGAACUCU
(((.((.((((((((......((((((((............))))))))......))))).))).))...)))....(((((......-.(((....))))))))..... ( -21.41)
>DroYak_CAF1 3502 109 - 1
ACCGAAAGCUGUACAACUAAUGCUCAAAAUAUGUAAACACAUAUUUAACGUUUAAUGUACUGACACUAUAGGUUACAUCACUAGACUU-UGGGUGGACCUGGUGAACUCU
..(....)..(((((...((((....((((((((....))))))))..))))...)))))...((((..(((((.((((.(.......-.))))))))))))))...... ( -22.60)
>consensus
ACCGAAAGCUGUACAACUAAUGCUAAAUAUAUGUAAACAUAUAUUUAGCGUUUAAUGUACUGACAUUUUAGGUUACAUCACUCGACUUUUGGGUGAACCCAGUGAACACU
..(....)..(((((...((((.((((((((((....)))))))))).))))...)))))...((((...((((....((((((.....)))))))))).))))...... (-17.38 = -19.34 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:23 2006