Locus 2891

Sequence ID 3L_DroMel_CAF1
Location 8,265,935 – 8,266,038
Length 103
Max. P 0.550820
window4518

overview

Window 8

Location 8,265,935 – 8,266,038
Length 103
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 83.75
Mean single sequence MFE -24.34
Consensus MFE -17.30
Energy contribution -16.74
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.71
SVM decision value 0.03
SVM RNA-class probability 0.550820
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8265935 103 + 23771897
UGCUGAUAAUAGUGAUUAGAGUGCAAAUGAUUGAUUGAUCAUUAUUAUAAUGGAGAUCCUUGAUUACUUUAUUUUCACUGGGAGUAAGUAGGCAGCAUGGGU---------A
(((((((((((((((((((....(((....))).)))))))))))))).........(((...(((((((..........)))))))..)))))))).....---------. ( -24.50)
>DroSec_CAF1 1360 99 + 1
UGCUGAUAAUAGUGAUUAGAGUGCAAACGAUUGAUUGAUCAUUAUUAUAAUGGAGAUCCUCGAUUGCUUUAUUUUCACUGGGAG----UAGGCAGCAUGGCU---------A
(((((.((.((((((..(....((((.(((..((((..((((((...)))))).)))).))).))))....)..))))))....----))..))))).....---------. ( -25.30)
>DroSim_CAF1 1369 99 + 1
UGCUGAUAAUAGUGAUUAGAGUGCAAACGAUUGAUUGAUCAUUAUUAUAAUGGAGAUCCUCGAUUGCUUUAUUUUCACUGGGAG----UAGGCAGCAUGGCU---------A
(((((.((.((((((..(....((((.(((..((((..((((((...)))))).)))).))).))))....)..))))))....----))..))))).....---------. ( -25.30)
>DroEre_CAF1 1391 112 + 1
UGCUGAUAAUAGUGAUUAGAGUGUAACAGACUGAUUGAUCAUUAUUAUAAUGGAGAUUCUCGAUUGCUUUAUUUUCACUAGGAGUAAGUAAGCAAUAUGGGUAAGUUUCGAA
.....(((((((((((((((((.......)))..))))))))))))))....(((((((((((((((((...((((....)))).....))))))).))))..))))))... ( -25.80)
>DroYak_CAF1 1406 104 + 1
UGCUGAUAAUAGUGAUUAGAGGGGAAUAGAUUGAUUGAUCAUUAUUAUAAUAGAGAUUCUCUAUUGCUUUAUUUUCACUAGGAGUAAGUAAGCAGU--------GUUUCGAA
((((..(..((((((.(((((.......((((....)))).......((((((((...)))))))))))))...))))))..)...))))......--------........ ( -20.80)
>consensus
UGCUGAUAAUAGUGAUUAGAGUGCAAAAGAUUGAUUGAUCAUUAUUAUAAUGGAGAUCCUCGAUUGCUUUAUUUUCACUGGGAGUAAGUAGGCAGCAUGGCU_________A
((((..(..((((((.((((((......((((((..((((.((((....)))).)))).))))))))))))...))))))..).......)))).................. (-17.30 = -16.74 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:22 2006