Locus 2890

Sequence ID 3L_DroMel_CAF1
Location 8,264,579 – 8,264,677
Length 98
Max. P 0.525417
window4517

overview

Window 7

Location 8,264,579 – 8,264,677
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 97.28
Mean single sequence MFE -29.67
Consensus MFE -27.27
Energy contribution -28.03
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.92
SVM decision value -0.02
SVM RNA-class probability 0.525417
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8264579 98 + 23771897
ACCUGCUCCUCAUGAUAUUCGCCCACCGGUCUGUCUGUGGGUUUUGUCUUUUUCGUCUUGCUCGCAGGAGCUGGUUUGCUAUACUUGCUGGACAAGGC
.............((((...((((((.((....)).))))))..))))......((((((((.((((((((......)))...))))).)).)))))) ( -28.90)
>DroSim_CAF1 50 98 + 1
ACCUUCUCCUCAUGAUAUUCGCCCACCGGUCUGUCUGUGGGUUUUGUCUUUUUCGUCUUGCUCGCAGGAGCUGGUUUGCUAUACUUGCUGGACAAGGC
.((((.(((.((.(.(((..((..((((((...(((((((((...(.(......).)..))))))))).))))))..)).)))).))..))).)))). ( -29.60)
>DroEre_CAF1 50 98 + 1
ACCUGCUCCUCAUGAUAUUCACCCACCGGUCUGUCUGUGGGUUUUGUCUUUUUCGUCUUGCUCGCAGGAGCUGGUUUGCUAUAUUUGCUGGACAAGGC
.(((..(((....(((((......((((((...(((((((((...(.(......).)..))))))))).)))))).....)))))....)))..))). ( -28.30)
>DroYak_CAF1 50 98 + 1
ACCUGCUCCUCAUGAUAUUCGCCCACCGGUCUGUCUGUGGGUUUGGUCUUUUUCGUCUUGCUCGCAGGAGCUGGUUUGCUAUAUUUACUGGACAAGGC
.(((..(((....(((((..((..((((((...(((((((((..((.(......).)).))))))))).))))))..)).)))))....)))..))). ( -31.90)
>consensus
ACCUGCUCCUCAUGAUAUUCGCCCACCGGUCUGUCUGUGGGUUUUGUCUUUUUCGUCUUGCUCGCAGGAGCUGGUUUGCUAUACUUGCUGGACAAGGC
.(((..(((....(((((..((..((((((...(((((((((...(.(......).)..))))))))).))))))..)).)))))....)))..))). (-27.27 = -28.03 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:20 2006