| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,257,851 – 8,257,960 |
| Length | 109 |
| Max. P | 0.569937 |
| Location | 8,257,851 – 8,257,960 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -37.92 |
| Consensus MFE | -30.74 |
| Energy contribution | -29.58 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8257851 109 - 23771897 AU------C-----CCGCAGAUCGAUCGCGUGUGCAAGGAGCAACUGCAUUACGCACGCGAGGGCGUUGGCCAAGACGGCAACGGCUGGCAAAUCUUUGCCGACGAGGGGGAGAUCAAAA .(------(-----((.(...(((.(((((((((.((...((....)).)).)))))))))((.(((((.((.....))))))).))(((((....)))))..))).)))))........ ( -43.00) >DroVir_CAF1 103572 115 - 1 AUGUCACUU-----GUACAGAUUGAUCGUGUAUGCAAGGAGCAGCUGCACUAUGCGCGCGAGGGCGUCGGCCAGGAUGGCAAUGGCUGGCAAAUCUUUGCCGACGAGGGUGAAAUCAAAA ...((((((-----...........((((((..(((.((.((....)).)).)))))))))...(((((((.(((((.((........))..))))).))))))).))))))........ ( -38.50) >DroGri_CAF1 97914 108 - 1 U-------U-----UUGUAGAUUGAUCGCGUGUGCAAGGAACAGCUGCACUAUGCACGCGAGGGCGUCGGCCAGGAUGGCAAUGGCUGGCAAAUUUUUGCCGAUGAGGGUGAAAUCAAAA .-------.-----.......((((((.((((((((.((..(....)..)).)))))))).))..((((((((.........))))))))....(((..((......))..))))))).. ( -33.60) >DroWil_CAF1 103784 114 - 1 UU------CUGCCACCACAGAUUGAUCGUGUUUGCAAGGAGCAAUUGCAUCAUGCACGUGAGGGCGUCGGACAGGAUGGCAAUGGUUGGCAAAUUUUUGCCGAUGAGGGUGAAAUCAAAA ..------..(((..(((.((....))((((.(((((.......)))))....)))))))..))).........(((..((.(.((((((((....)))))))).)...))..))).... ( -33.90) >DroMoj_CAF1 103692 108 - 1 C-------C-----AUACAGAUUGAUCGCGUGUGCAAGGAGCAGCUGCACUAUGCGCGCGAGGGCGUCGGCCAGGACGGCAAUGGCUGGCAAAUCUUUGCCGACGAGGGCGAAAUCAAAA .-------.-----.....((((..(((((((((((.((.((....)).)).))))))).....(((((((.((((((((....)))).....)))).)))))))...)))))))).... ( -42.30) >DroAna_CAF1 83527 111 - 1 GUUU----U-----UCUCAGAUCGAUCGCGUGUGCAAGGAGCAGCUGCACUAUGCCAGGGAAGGCGUCGGCCAGGAUGGCAACGGUUGGCAAAUCUUCGCCGACGAGGGUGAGAUUAAAA .((.----.-----(((((..(((.(((((((((((.(......)))))).))))..(((((((.....(((((..((....)).)))))...))))).)))))))...)))))..)).. ( -36.20) >consensus AU______C_____CCACAGAUUGAUCGCGUGUGCAAGGAGCAGCUGCACUAUGCACGCGAGGGCGUCGGCCAGGAUGGCAAUGGCUGGCAAAUCUUUGCCGACGAGGGUGAAAUCAAAA ...................((((..((((((..(((.((.((....)).)).)))))))))...(((((((.((((..((........))...)))).))))))).......)))).... (-30.74 = -29.58 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:18 2006