Locus 2885

Sequence ID 3L_DroMel_CAF1
Location 8,242,999 – 8,243,091
Length 92
Max. P 0.798892
window4506 window4507

overview

Window 6

Location 8,242,999 – 8,243,091
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 86.75
Mean single sequence MFE -25.93
Consensus MFE -24.37
Energy contribution -24.23
Covariance contribution -0.14
Combinations/Pair 1.09
Mean z-score -1.42
Structure conservation index 0.94
SVM decision value 0.61
SVM RNA-class probability 0.798892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8242999 92 + 23771897
CGGUAUCAUUGAAGUGCGUAGCCACCGGAAAUCCACUGCCUCAAUUUACAUGGUCCCUGGACGGAUUUCCGGUGAGUUCAACCGCCAAACGG
((((..(((....))).(.(((((((((((((((.......((.......))(((....))))))))))))))).)))).))))........ ( -29.60)
>DroVir_CAF1 85145 86 + 1
CGGUAUCAUUGAAAUGCGUUGCCACCGGAAAUCCACUGCCGCAAUUUACAUGGUCUUUGGACGGAUUUCCGGUAAGUAGGGCCC-CA-----
...............((.((((.(((((((((((.......((.......))(((....))))))))))))))..)))).))..-..----- ( -26.30)
>DroGri_CAF1 81331 79 + 1
CUGUAUCAUUGAAAUGCGUUGCUACCGGAAAUCCACUGCCGCAAUUUACAUGGUCUUUGGACGGAUUUCCGGUAAGUUU-------------
..((((.......))))...((((((((((((((.......((.......))(((....)))))))))))))).)))..------------- ( -22.60)
>DroMoj_CAF1 85339 87 + 1
CGGUAUCAUUGAAAUGCGUUGCCACCGGAAAUCCACUGCCGCAAUUUACAUGGUCUUUGGACGGAUUUCCGGUAAGUAUGGCCCACA-----
.((((.(((....)))...))))(((((((((((.......((.......))(((....))))))))))))))..............----- ( -24.60)
>DroAna_CAF1 67760 86 + 1
CGGUGUCAUUGAAGUGCGUCGCCACCGGAAAUCCACUGCCUCAAUUUACAUGGUCCCUGGACGGAUUUCCGGUAAGUUAAGCCACC------
.((((.(((....)))...))))(((((((((((.......((.......))(((....)))))))))))))).............------ ( -27.30)
>DroPer_CAF1 69381 87 + 1
CGGUAUCAUUGAAGUGCGUUGCCACCGGAAAUCCACUGCCGCAAUUUACAUGGUCUCUGGACGGAUUUCCGGUAAGUUAAGCCACCA-----
.((((.(((....)))...))))(((((((((((.......((.......))(((....))))))))))))))..............----- ( -25.20)
>consensus
CGGUAUCAUUGAAAUGCGUUGCCACCGGAAAUCCACUGCCGCAAUUUACAUGGUCUCUGGACGGAUUUCCGGUAAGUUAAGCCACCA_____
.((((.(((....)))...))))(((((((((((.......((.......))(((....))))))))))))))................... (-24.37 = -24.23 +  -0.14)

alignment

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secondary structure

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dotplot

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Window 7

Location 8,242,999 – 8,243,091
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 86.75
Mean single sequence MFE -27.10
Consensus MFE -23.53
Energy contribution -23.25
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.62
Structure conservation index 0.87
SVM decision value 0.31
SVM RNA-class probability 0.682051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8242999 92 - 23771897
CCGUUUGGCGGUUGAACUCACCGGAAAUCCGUCCAGGGACCAUGUAAAUUGAGGCAGUGGAUUUCCGGUGGCUACGCACUUCAAUGAUACCG
..((.(((((......).(((((((((((((((....)))..(((........)))..)))))))))))))))).))............... ( -30.90)
>DroVir_CAF1 85145 86 - 1
-----UG-GGGCCCUACUUACCGGAAAUCCGUCCAAAGACCAUGUAAAUUGCGGCAGUGGAUUUCCGGUGGCAACGCAUUUCAAUGAUACCG
-----.(-..(((......((((((((((((((....)))..(((........)))..))))))))))))))..)................. ( -25.70)
>DroGri_CAF1 81331 79 - 1
-------------AAACUUACCGGAAAUCCGUCCAAAGACCAUGUAAAUUGCGGCAGUGGAUUUCCGGUAGCAACGCAUUUCAAUGAUACAG
-------------....((((((((((((((((....)))..(((........)))..)))))))))))))..................... ( -22.60)
>DroMoj_CAF1 85339 87 - 1
-----UGUGGGCCAUACUUACCGGAAAUCCGUCCAAAGACCAUGUAAAUUGCGGCAGUGGAUUUCCGGUGGCAACGCAUUUCAAUGAUACCG
-----((((.(((......((((((((((((((....)))..(((........)))..))))))))))))))..)))).............. ( -26.80)
>DroAna_CAF1 67760 86 - 1
------GGUGGCUUAACUUACCGGAAAUCCGUCCAGGGACCAUGUAAAUUGAGGCAGUGGAUUUCCGGUGGCGACGCACUUCAAUGACACCG
------((((((.....((((((((((((((((....)))..(((........)))..)))))))))))))....)).(......).)))). ( -30.20)
>DroPer_CAF1 69381 87 - 1
-----UGGUGGCUUAACUUACCGGAAAUCCGUCCAGAGACCAUGUAAAUUGCGGCAGUGGAUUUCCGGUGGCAACGCACUUCAAUGAUACCG
-----.((((((.......((((((((((((((....)))..(((........)))..)))))))))))(....))).(......).)))). ( -26.40)
>consensus
_____UGGGGGCUAAACUUACCGGAAAUCCGUCCAAAGACCAUGUAAAUUGCGGCAGUGGAUUUCCGGUGGCAACGCACUUCAAUGAUACCG
.................((((((((((((((((....)))..(((........)))..)))))))))))))..................... (-23.53 = -23.25 +  -0.28)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:11 2006