| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,238,839 – 8,238,949 |
| Length | 110 |
| Max. P | 0.506918 |
| Location | 8,238,839 – 8,238,949 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.73 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -10.33 |
| Energy contribution | -13.17 |
| Covariance contribution | 2.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8238839 110 + 23771897 CA--------AAUGGGCAUGCCUUUGCAAAAUGCUCGUCGUAAGACGAGAAAUGCACUCAAGUGCAAUUAAAACCAAAUUAAAAUCAAUAACUUUUAUGGUGAAAAAAUCCGAUUGCA-- ((--------(.(((((((.....((((.....((((((....))))))...)))).....)))).......((((...(((((........)))))))))........))).)))..-- ( -26.40) >DroPse_CAF1 62785 104 + 1 CCCAUGC---AAUGCACAUGCCUUUGC-----------CAUAAGACGGGAAAUGCACUCAAGUGCAAUUAAAGCCAAAUUAAAAUCAAUAACUUUUAUGGA--AAAAAUCCCCCCGCAUU .....((---((.((....))..))))-----------.....(.((((...(((((....))))).......(((...(((((........)))))))).--.........)))))... ( -19.70) >DroSec_CAF1 61395 110 + 1 CA--------AAUGGGCAUACCUUUGCAAAAUGCUCGUCGUAAGACGAGAAAUGCACUCAAGUGCAAUUAAAACCAAAUUAAAAUCAAUAACUUUUAUGGGGGAAAAAUGCGAUUGCA-- ..--------.....(((.....(((((.....((((((....))))))...(((((....))))).......((....(((((........)))))....)).....))))).))).-- ( -27.30) >DroEre_CAF1 64787 109 + 1 CA--------AAUGGGCAUGCCUUUGCAAAAUGCUCGUCGUAAGACGUGAAAUGCACUCAAGUGCAAUUAAAACCAAAUUAAAAUCAAUAACUUUUAUGGGGA-AAAAUCCAAUUGCA-- ..--------...((((((((....)))...)))))(((....)))(..(..(((((....))))).......(((...(((((........))))))))(((-....)))..)..).-- ( -24.30) >DroYak_CAF1 64967 119 + 1 CAAAUGUGAAAAUGGGCAUGCCUUUGCAAAAUGCUCGUCGCAAGACGAGAAAUGCACUCAAGUGCAAUUAAAACCAAAUUAAAAUCAAUAACUUUUAUGGGGA-AAAAUCCAAUUGCAUA ...(((..(...((((((......)))......((((((....))))))...(((((....))))).......))).....................((((..-....)))).)..))). ( -31.20) >DroPer_CAF1 65118 104 + 1 CCCAUGC---AAUGCACAUGCCUUUGC-----------CAUAAGACGGGAAAUGCACUCAAGUGCAAUUAAAGCCAAAUUAAAAUCAAUAACUUUUAUGGA--AAAAAUCCCCCCACAUU .....((---((.((....))..))))-----------........((((..(((((....))))).......(((...(((((........)))))))).--.....))))........ ( -18.50) >consensus CA________AAUGGGCAUGCCUUUGCAAAAUGCUCGUCGUAAGACGAGAAAUGCACUCAAGUGCAAUUAAAACCAAAUUAAAAUCAAUAACUUUUAUGGGGAAAAAAUCCAAUUGCA__ ........................(((((......((((....)))).....(((((....))))).......(((...(((((........)))))))).............))))).. (-10.33 = -13.17 + 2.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:09 2006