| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,229,281 – 8,229,383 |
| Length | 102 |
| Max. P | 0.896309 |
| Location | 8,229,281 – 8,229,383 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.24 |
| Mean single sequence MFE | -31.28 |
| Consensus MFE | -25.19 |
| Energy contribution | -24.67 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8229281 102 + 23771897 -----------AGUGUUUUCUUUGUCCAGGUGGAGUGGACCCCCAUCCCGCCGCAGCAGGACAUGGUGUUCCAGCUCUCCAACGGUAGCAUGAUGUUCUAUCCCUUUACGGCC -----------.(((........((...(((((..(((....)))..)))))...))(((((((.(((((((...........)).))))).))))))).......))).... ( -30.40) >DroEre_CAF1 55433 113 + 1 CUCACUGCCCCUGUGUUUACUUCGUCCAGGUGGAAUGGACGCCCAUCCCGCCGCAGCAGGACAUGGUGUUCCAGCUGUCCAACGGCAGCAUGAUGUUCUACCCCUUUACGGCC ......(((..............((...(((((.((((....)))).)))))...))(((((((.(((((...((((.....))))))))).)))))))..........))). ( -36.00) >DroWil_CAF1 67592 101 + 1 --CA-------UACC-UUUC--AUUUCAGGUGGAAUGGACACCCAUACCACCGCAACAGGAUAUGGUCUUUCAACUAUCCAAUGGCAGCAUGAUGUUCUAUCCUUUCACAGCU --..-------....-....--......(((((.((((....)))).)))))((....((((((((....)))..))))).((((.(((.....))))))).........)). ( -23.60) >DroYak_CAF1 54387 89 + 1 ------------------------GCCAGGUGGAAUGGACCCCCAUCCCGCCGCAGCAGGACAUGGUGUUCCAGCUCUCCAACGGCAGCAUGAUGUUCUACCCUUUCACGGCC ------------------------(((.(((((.((((....)))).))))).....(((((((.(((((((...........)).))))).)))))))..........))). ( -33.20) >DroMoj_CAF1 63198 93 + 1 -------UGUCG-------------CUAGGUGGAAUGGACGCCCAUACCGCCGCAGCAGGACAUGGUCUUCCAGCUGUCCAAUGGCAGCAUGAUGUUCUAUCCGUUCACGGCC -------....(-------------((.(((((.((((....)))).)))))..)))(((((((((....)).((((((....))))))...)))))))..(((....))).. ( -36.80) >DroAna_CAF1 53575 102 + 1 -----------UUUCGUUUUAUCCCCCAGGUGGAAUGGACACCUAUCCCGCCGCAGCAGGAUAUGGUGUUCCAGCUCUCGAACGGCAGUAUGAUGUUCUAUCCCUUCACGGCC -----------...........((...(((.(((.(((((((((((((.((....)).))))).)))).))))......(((((.(.....).)))))..))))))...)).. ( -27.70) >consensus ___________U_U__UUUC____UCCAGGUGGAAUGGACACCCAUCCCGCCGCAGCAGGACAUGGUGUUCCAGCUCUCCAACGGCAGCAUGAUGUUCUAUCCCUUCACGGCC ............................(((((.((((....)))).))))).....(((((((.(((((((...........)).))))).))))))).............. (-25.19 = -24.67 + -0.53)
| Location | 8,229,281 – 8,229,383 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.24 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -24.66 |
| Energy contribution | -24.30 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8229281 102 - 23771897 GGCCGUAAAGGGAUAGAACAUCAUGCUACCGUUGGAGAGCUGGAACACCAUGUCCUGCUGCGGCGGGAUGGGGGUCCACUCCACCUGGACAAAGAAAACACU----------- .((((((..((((((.........(((.((...))..)))(((....)))))))))..))))))(((.(((((.....))))))))................----------- ( -32.00) >DroEre_CAF1 55433 113 - 1 GGCCGUAAAGGGGUAGAACAUCAUGCUGCCGUUGGACAGCUGGAACACCAUGUCCUGCUGCGGCGGGAUGGGCGUCCAUUCCACCUGGACGAAGUAAACACAGGGGCAGUGAG .(((.....(((((.((...((((.(((((((.(((((..(((....))))))))....))))))).))))...)).))))).((((.............)))))))...... ( -44.42) >DroWil_CAF1 67592 101 - 1 AGCUGUGAAAGGAUAGAACAUCAUGCUGCCAUUGGAUAGUUGAAAGACCAUAUCCUGUUGCGGUGGUAUGGGUGUCCAUUCCACCUGAAAU--GAAA-GGUA-------UG-- ....(.(((.(((((.....((((((..((...((((((((....)))..)))))......))..)))))).))))).))))((((.....--...)-))).-------..-- ( -29.30) >DroYak_CAF1 54387 89 - 1 GGCCGUGAAAGGGUAGAACAUCAUGCUGCCGUUGGAGAGCUGGAACACCAUGUCCUGCUGCGGCGGGAUGGGGGUCCAUUCCACCUGGC------------------------ .((((.(.((.(((((.........))))).))((((...((((...((..(((((((....)))))))..)).)))))))).).))))------------------------ ( -32.80) >DroMoj_CAF1 63198 93 - 1 GGCCGUGAACGGAUAGAACAUCAUGCUGCCAUUGGACAGCUGGAAGACCAUGUCCUGCUGCGGCGGUAUGGGCGUCCAUUCCACCUAG-------------CGACA------- ...(((....(((..((...((((((((((...(((((..(((....))))))))......))))))))))...))...))).....)-------------))...------- ( -30.70) >DroAna_CAF1 53575 102 - 1 GGCCGUGAAGGGAUAGAACAUCAUACUGCCGUUCGAGAGCUGGAACACCAUAUCCUGCUGCGGCGGGAUAGGUGUCCAUUCCACCUGGGGGAUAAAACGAAA----------- (((.((((.(........).))))...))).((((......(((.((((.((((((((....)))))))))))))))(((((......)))))....)))).----------- ( -36.40) >consensus GGCCGUGAAGGGAUAGAACAUCAUGCUGCCGUUGGAGAGCUGGAACACCAUGUCCUGCUGCGGCGGGAUGGGCGUCCAUUCCACCUGGA____GAAA__A_A___________ .((((((..((((((.....(((.(((..(....)..)))))).......))))))..))))))(((((((....)))))))............................... (-24.66 = -24.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:07 2006