Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 825,246 – 825,366 |
Length | 120 |
Max. P | 0.982585 |
Location | 825,246 – 825,366 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.97 |
Mean single sequence MFE | -51.89 |
Consensus MFE | -47.91 |
Energy contribution | -48.23 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -3.03 |
Structure conservation index | 0.92 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 825246 120 + 23771897 AGCAUGUCGAGGACUUCGGAUGACAUCCGGAAGCACCUGAAAGUGCGGCGCCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG (((.(((...(((((((((((...)))).......((((...(..((((((((....((...((((.....)))).))...))))))))..).)))).......)))))))..)))))). ( -51.80) >DroSec_CAF1 1722 120 + 1 AGCAUGUCGAGGACUUCGGAUGAUAUCCGGAAGCACCUGAAAGUGCGGCGUCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG (((.(((...(((((((((((...)))).......((((...(..((((((((....((...((((.....)))).))...))))))))..).)))).......)))))))..)))))). ( -49.10) >DroSim_CAF1 1724 120 + 1 AGCAUGUCGAGGACUUCGGAUGAUAUCCGGAAGCACCUGAAAGUGCGGCGCCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG (((.(((...(((((((((((...)))).......((((...(..((((((((....((...((((.....)))).))...))))))))..).)))).......)))))))..)))))). ( -51.80) >DroYak_CAF1 1701 120 + 1 AGCAUGUCGAGCACUUCGGAGGACAUCCGGAGGCAACUGAAGGUGCGGCGUCAGAAGCAGAGGGCCAUUUUGGCCACGAGAUGGCGCUGCGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG (((.((((((((.(((((((.....)))))))....(((..((((((((((((.........((((.....))))......)))))))))))))))...........)))))).))))). ( -54.86) >consensus AGCAUGUCGAGGACUUCGGAUGACAUCCGGAAGCACCUGAAAGUGCGGCGCCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG (((.(((...((((((((((.....))).......((((...(((((((((((....((...((((.....)))).))...))))))))))).)))).......)))))))..)))))). (-47.91 = -48.23 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:22 2006