| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,221,143 – 8,221,252 |
| Length | 109 |
| Max. P | 0.533664 |
| Location | 8,221,143 – 8,221,252 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.52 |
| Mean single sequence MFE | -30.46 |
| Consensus MFE | -25.33 |
| Energy contribution | -26.80 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8221143 109 - 23771897 GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACUGCUGGAACAACAGACAAUGGCUGUGGGACAGCCAGCAA-AUGGGCGGGAAAUGAAUGG- ...((....))..(((........((((((.(((........(((((.....)))))............((((((.....))))))))).-.))))))........))).- ( -33.19) >DroSec_CAF1 43458 109 - 1 GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACGGAUGGAACAACAGACAAUGGCUGUUGGACAGCUAGCAA-AUGGGCGGGAAAUGAAUGG- .(((((((.(((...(((.........))).)))...........((....(..((......))..)..((((((.....))))))))..-.)))))))...........- ( -28.60) >DroSim_CAF1 41683 109 - 1 GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACUGCUGGAACAACAGACAAUGGCUGUUGGACAGCCAGCAA-AUGGGCGGGAAAUGAAUGG- ...((....))..(((........((((((.(((........(((((.....)))))............((((((.....))))))))).-.))))))........))).- ( -33.19) >DroEre_CAF1 47079 109 - 1 GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACUGCUGGAACAACAGACAAUGGCUGUCGGACAGCCAGCAA-AUGGGCGGGAAAUGAAUGG- ...((....))..(((........((((((.(((........(((((.....)))))............((((((.....))))))))).-.))))))........))).- ( -33.19) >DroYak_CAF1 45295 111 - 1 GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACUGCUGGAACAACAGACAAUGGUUGUCGGACAGCCAGCAAAAUGGGCGGUAAAUGAAUGGG (((((....))..............(((((.(((........(((((.....)))))............((((((.....)))))))))...))))))))........... ( -33.00) >DroAna_CAF1 45286 93 - 1 GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACUGCUGGAA---CAGACAAUGGCUG-------------GA-ACGGUCGGAAAAUGGCAGG- ((((((...(((...(((.........))).)))((......)))))...((((((...---(((.......)))-------------..-.))).))).....)))...- ( -21.60) >consensus GCCGCUUAAGCAACAUGGAAAUUAUGCCCAGUGCGAAUAUCAUCAGCAAACUGCUGGAACAACAGACAAUGGCUGUCGGACAGCCAGCAA_AUGGGCGGGAAAUGAAUGG_ .((((....))..............(((((.(((........(((((.....)))))............((((((.....)))))))))...)))))))............ (-25.33 = -26.80 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:59 2006