| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,217,690 – 8,217,787 |
| Length | 97 |
| Max. P | 0.852300 |
| Location | 8,217,690 – 8,217,787 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.28 |
| Mean single sequence MFE | -26.42 |
| Consensus MFE | -11.85 |
| Energy contribution | -13.30 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8217690 97 - 23771897 -----AUGUGCGGGAAAAUGCGGGGGAAAGUGAUUUCUUAAUUUGUUACAGAAAAACUUUAACCUCC-CCGCCUGGCACAUGGAAAGAGAAAACCCCUUUACU -----((((((.((.....((((((((((((..((((((((....))).))))).)))))....)))-)))))).))))))....((((.......))))... ( -27.10) >DroSec_CAF1 39926 96 - 1 -----AUGUGCGGGAAAAUGCGGGGGAAAGUGAUUUCUUAAUUUGUUACAGAAAAACUUUAACCUCC-CCGCCUGGCACAUGGAAAGAAAAACCCCUUU-ACU -----((((((.((.....((((((((((((..((((((((....))).))))).)))))....)))-)))))).))))))..((((........))))-... ( -27.40) >DroSim_CAF1 37952 97 - 1 -----AUGUGCGGGAAAAUGCGGGGGAAAGUGAUUUCUUAAUUUGUUACAGAAAAACUUUAACCUCC-GCGCCUGGCACAUGGAAAGAAAAACCCCUUUCACU -----((((((.((....(((((((((((((..((((((((....))).))))).)))))..)))))-))).)).)))))).(((((........)))))... ( -32.40) >DroEre_CAF1 43432 92 - 1 -----AUGUGCGGGAAAAGGCGGGGGAAAGUGAUUUCUUAAUUUGUUACAGAAAAACUUUAACCUCC-CCGCCUGGCACA-----AGAAAAAUCCCCUUUAGU -----.(((((......((((((((((((((..((((((((....))).))))).)))))....)))-)))))).)))))-----.................. ( -28.30) >DroYak_CAF1 41721 97 - 1 ACUAUAUAUACGAGUAUUUGCGGUGGAAAGUGAUUUCUUAAUUUGUUACAGAAAAACUUUAACCUAC-CCGCUCGGCAGC-----AGGGGAAACCCCUUUACU ..........(((((....(.((((((((((..((((((((....))).))))).)))))...))))-))))))).....-----.(((....)))....... ( -23.10) >DroAna_CAF1 41415 84 - 1 -----ACCCAAGCACAUAUGGAGGCGAAAGUGAUUUCUUAAUUUGUUGCAGAA-AACUUUAACCCCUUCCUCCUG----A-----AGG----GCUUCUGUAUU -----..........((((((((((.(((((..((((((((....))).))))-))))))....(((((.....)----)-----)))----)))))))))). ( -20.20) >consensus _____AUGUGCGGGAAAAUGCGGGGGAAAGUGAUUUCUUAAUUUGUUACAGAAAAACUUUAACCUCC_CCGCCUGGCACA_____AGAAAAAACCCCUUUACU ......((((((((.......((((((((((..((((((((....))).))))).)))))..)))))....))).)))))....................... (-11.85 = -13.30 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:56 2006