Locus 2875

Sequence ID 3L_DroMel_CAF1
Location 8,216,686 – 8,216,783
Length 97
Max. P 0.660395
window4490

overview

Window 0

Location 8,216,686 – 8,216,783
Length 97
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 78.05
Mean single sequence MFE -29.84
Consensus MFE -12.74
Energy contribution -13.69
Covariance contribution 0.95
Combinations/Pair 1.12
Mean z-score -1.98
Structure conservation index 0.43
SVM decision value 0.27
SVM RNA-class probability 0.660395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8216686 97 - 23771897
----------UAUAUGUGGAGUACAUGGAGU--GCACGCAGCGCUGCUAAUUGCUUGCAUGCGAAACGUAACGUAAC----GUAACGAAAUGAGAGCAAGGAGCCAGCUUCCA
----------....((((..((((.....))--)).))))..((((((..(((((..(((.((..((((......))----))..))..)))..)))))..)).))))..... ( -29.40)
>DroSec_CAF1 38922 89 - 1
-------------AUGUGGAGUACAUGAAGU--GCACGCAGCGCUGCUAAUUGCUUGCAUGCGAAACGUAA-----C----GUAACGAAAUGAGAGCAAGGAGCCAGCUUCCA
-------------.((((..((((.....))--)).))))..((((((..(((((..(((.((..(((...-----)----))..))..)))..)))))..)).))))..... ( -26.40)
>DroSim_CAF1 36914 97 - 1
----------UAUAUGUGGAGUACAUGGAGU--GCACGCAGCGCUGCUAAUUGCUUGCAUGCGAAACGUAACGUAAC----GUAACGAAAUGAGAGCAAGGAGCCAGCUUCCA
----------....((((..((((.....))--)).))))..((((((..(((((..(((.((..((((......))----))..))..)))..)))))..)).))))..... ( -29.40)
>DroEre_CAF1 42408 107 - 1
GGAGCAGCUCUAUAUGUGGAGUACAUGGAGU--GCACGCAGCACUGCUAAUUGCUCGCAUGCGAAACGUAACGUAAC----GUAACGAAAUGAGAGCAAGGAGCCAGCUUCCA
(((((.((((((....))))))...((.(((--((.....)))))(((..((((((.(((.((..((((......))----))..))..))).))))))..)))))))))).. ( -37.70)
>DroAna_CAF1 38491 95 - 1
----------UACGUUUGUUCCUCAAGGAGGACUCACGCAGGA---CUAAUUGCUUGCAUGCGAAACGCAAUGAAACCAGAGCACCGAGA--AGCAAAAGGAGU---CUUCCA
----------................(((((((((..(((((.---(.....)))))).((((...))))...........((.......--.)).....))))---))))). ( -26.30)
>consensus
__________UAUAUGUGGAGUACAUGGAGU__GCACGCAGCGCUGCUAAUUGCUUGCAUGCGAAACGUAACGUAAC____GUAACGAAAUGAGAGCAAGGAGCCAGCUUCCA
...............(((.....)))((((...((.....))((((((..((((((.(((.((......................))..))).))))))..)).)))))))). (-12.74 = -13.69 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:55 2006