Locus 2873

Sequence ID 3L_DroMel_CAF1
Location 8,203,927 – 8,204,027
Length 100
Max. P 0.635530
window4487

overview

Window 7

Location 8,203,927 – 8,204,027
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 82.88
Mean single sequence MFE -23.67
Consensus MFE -15.80
Energy contribution -17.00
Covariance contribution 1.20
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.67
SVM decision value 0.21
SVM RNA-class probability 0.635530
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8203927 100 - 23771897
AUAAUUA-UGGUGCAAUCAU-GUGGCUUACCAAAUCGUGCCACAUCUUAUCUAUAUAGGUCCUGGAGGCCUUGUCCAGGAGCAGUAUCCAACGACCACCGUU
......(-(((((...((((-(((((............))))))).......((((.(.(((((((.......))))))).).)))).....)).)))))). ( -29.40)
>DroSec_CAF1 31439 100 - 1
AUAAUUA-UGGUACAAUCAA-GUGGCUUACCAAAUCGUGCCACAUCUUAUCUAUAUAGGUCCUGGAGGCCUUGUCCAGGAGCAGUAUCCAACGACCACCGUU
.......-.(((((......-(((((............)))))..............(.(((((((.......))))))).).))))).((((.....)))) ( -26.70)
>DroSim_CAF1 29357 100 - 1
AUAAUUA-UGGUACUAUCAA-GUGGCUUACCAAAUCGUGCCACAUCUUAUCUAUAUAGGUCCUGGAGGCCUUGUCCAGGAGCAAUAUCCAACGACCACCGUU
......(-((((........-(((((............)))))..............((((.((((.(((((....))).))....))))..))))))))). ( -26.20)
>DroEre_CAF1 34809 100 - 1
AACUUCA-UGGUACAACCAA-GUGGCUUACCAAAUCAUGCCACAUCUUAUCUAUAUAGGUCCUAGAGGCCUUGCCCAAGAGCAUUAUCCAACGACCACCCUC
.......-(((.....))).-(((((............)))))..............((((...((.(((((....))).))....))....))))...... ( -19.70)
>DroWil_CAF1 40051 99 - 1
U---UGGUAGUUACAAUUAAUGCCUCUAACCAAAUCAUGCCACAUCUUAUUGACAAAGUACUUGGAGGCUUUUUCCAAGAGCAUUAUCCAGCGACCGCCAUU
.---(((..((..(...((((((..............(((....((.....))....)))(((((((.....))))))).))))))....)..))..))).. ( -20.20)
>DroYak_CAF1 33008 94 - 1
A-------AAAUACAAUCAA-GUGGCUUACCAAAUCAUGCCACAUCUUAUCUAUAUAGGUCCUGGAGGCCUUGUCCAGCAGCAUUAUCCAACGACCACCCUC
.-------............-(((((............)))))..............((((.((((.((..((.....))))....))))..))))...... ( -19.80)
>consensus
AUAAUUA_UGGUACAAUCAA_GUGGCUUACCAAAUCAUGCCACAUCUUAUCUAUAUAGGUCCUGGAGGCCUUGUCCAGGAGCAUUAUCCAACGACCACCGUU
.........(((.........(((((............)))))..............((((.((((.(((((....))).))....))))..)))))))... (-15.80 = -17.00 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:52 2006