| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,201,151 – 8,201,252 |
| Length | 101 |
| Max. P | 0.609135 |
| Location | 8,201,151 – 8,201,252 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -17.81 |
| Energy contribution | -17.83 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8201151 101 - 23771897 UGAAAGCACAAAGCAUGCGAUGAUGUACGGAACGACGCACGUCGUACAUUUUGCACCUUGAAGUGGCAAGCGG-AGGAGAUGC------UCUCCUCCACU---CCCGCUUC .....((.....)).(((((.((((((((..(((.....))))))))))))))))....(((((((..((.((-(((((....------.))))))).))---.))))))) ( -40.10) >DroPse_CAF1 28495 78 - 1 UGAAAGCACAAAGCAUGCGAUGAUGUACGAGACGACGCACGUCGUACAUUUUGCACCUUGAAGUGGCAAGCGA--GGAGC------------------------------- .....((.....)).(((((.(((((((..((((.....))))))))))))))))(((((..........)))--))...------------------------------- ( -20.90) >DroSec_CAF1 28633 104 - 1 UGAGAGCACAAAGCAUGCGAUGAUGUACGGAACGACGCACGUCGUACAUUUUGCACCUUGAAGUGGCAAGCGG-AGGAGAUAC------CCUCCUCCAGGAGAUACCCUCC ............((.(((.(((((((.((......)).))))))).((((((.......))))))))).))((-(((((....------.))))))).((((.....)))) ( -36.20) >DroSim_CAF1 26592 87 - 1 UGAGAGCACAAAGCAUGCGAUGAUGUACGGAACGACGCACGUCGUACAUUUUGCACCUUGAAGUGGCAAGCGG-AGGAGAUAC-----------------------CCUCC ............((.(((.(((((((.((......)).))))))).((((((.......))))))))).))((-(((......-----------------------))))) ( -26.30) >DroYak_CAF1 30102 103 - 1 UGAGAGCACAAAGCAUGCGAUGAUGUACGAAACGACGCACGUCGUACACUUUGCACCUUGAAGUGGCAAGCGG-CGGAGC---UUCCACUCCACUCCACU----CCCCUCC .(((.((.....((.(((.(((((((.((......)).))))))).((((((.......))))))))).)).)-)((((.---.....)))).)))....----....... ( -29.20) >DroAna_CAF1 27355 80 - 1 GGAGAGCACAAAGCAUCCGAUGAUGUACGGAACGACGCACGUCGUACAUUUUGCACCUUGAAGUGGCAAGCAGGUGGAAG------------------------------- (((..((.....)).))).(((((((.((......)).)))))))...(((..(..((((......))))...)..))).------------------------------- ( -20.50) >consensus UGAGAGCACAAAGCAUGCGAUGAUGUACGGAACGACGCACGUCGUACAUUUUGCACCUUGAAGUGGCAAGCGG_AGGAGA__________________________CCUCC ............((.(((.(((((((.((......)).))))))).((((((.......))))))))).))........................................ (-17.81 = -17.83 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:50 2006