Locus 287

Sequence ID 3L_DroMel_CAF1
Location 823,619 – 823,739
Length 120
Max. P 0.757017
window429

overview

Window 9

Location 823,619 – 823,739
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.89
Mean single sequence MFE -39.56
Consensus MFE -27.14
Energy contribution -25.42
Covariance contribution -1.72
Combinations/Pair 1.38
Mean z-score -1.23
Structure conservation index 0.69
SVM decision value 0.49
SVM RNA-class probability 0.757017
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 823619 120 + 23771897
AGGAGCUUCAGAUCUCACAUAGUGCCACCAUUUGGGUGGCAUGUACAAACAGUCACCAGGUUGCAGGAGCAGCUGGUAGAACUUCACCUUGGCUACCAAGGGAUAUGUUUCAGGAUCCAG
.(((.(((.............((((((((.....))))))))....(((((((((((((.((((....))))))))).........((((((...))))))))).))))).))).))).. ( -41.00)
>DroPse_CAF1 42 120 + 1
UGGCGUUUCCGCACGCACAUAGUGCCACCAUUUGGGUGGCAUAUACAAGCAGUCGCCUGGCUGAAGAAGCAGUUUAUAGAAGCGCACCCUCUCCAGUAGGGGAUACGUCUUGAAGUCUAG
.(((((.(((((..((.....((((((((.....)))))))).......(((((....))))).....)).((((....))))))..((((....).)))))).)))))........... ( -38.30)
>DroEre_CAF1 31 120 + 1
AGGAGCUUCAGAUCUCACGUAGUGCCACCACUUGGGUGGCAUGUACAAGCAAUCACCGGGUUGGAGGAGCAGCUGGUAGAAUUUCGCCUUUGCUACCAAGGGAUACGUUUCAGGAUCCAG
.((.(((((.........(((((((((((.....)))))))).)))...(((((....)))))..)))))(((.(((........)))...))).))...((((.(......).)))).. ( -38.20)
>DroWil_CAF1 477 120 + 1
CGGCGUUUUGGCCUGUACAUAGUGCCACCAUUUGGGUGGCAUAUAUAAGCAGUCUCCAGGCUGUAGGAAAAGUUCAUAAAAUUGUACACUUUCGGCAAGUGGAUAAGUCUGAAGAUCCAA
.(((......)))((((((..((((((((.....))))))))......((((((....))))))..................))))))((((.(((..........))).))))...... ( -35.30)
>DroYak_CAF1 10 120 + 1
AGGAGCUUCAGAUCUCACGUAGUGCCACCAUUUGGGGGGCAAGUACAAGCAAUCACCGGGUUGCAGGAGCAGCUGGUAGAACUUCACCUUGGCCACCAAGGGAUACGUGUCCGGAUCCAG
.((((((((.........(((.((((.((....))..))))..)))..((((((....)))))).)))))..((((.......((.((((((...)))))))).......)))).))).. ( -43.04)
>DroPer_CAF1 87 120 + 1
UGGCGUUUCCGCACGCACAUAGUGCCACCAUUUGGGUGGCAUAUACAAGCAGUCGCCUGGCUGAAGAAGCAGUUUAUAGAAGCGCACCCUCUCCAGCAGGGGAUACGUCUUGUAGUCUAG
..((((......)))).....((((((((.....)))))))).(((((((.(((.((((.(((.(((.((.((((....))))))....))).))))))).)))..).))))))...... ( -41.50)
>consensus
AGGAGCUUCAGAUCGCACAUAGUGCCACCAUUUGGGUGGCAUAUACAAGCAGUCACCAGGCUGAAGGAGCAGCUGAUAGAACUGCACCCUCGCCACCAAGGGAUACGUCUCAGGAUCCAG
.((.(((((............((((((((.....)))))))).......(((((....)))))..)))))................((((.......))))...............)).. (-27.14 = -25.42 +  -1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:21 2006