Locus 2869

Sequence ID 3L_DroMel_CAF1
Location 8,199,455 – 8,199,553
Length 98
Max. P 0.915376
window4482

overview

Window 2

Location 8,199,455 – 8,199,553
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 93.20
Mean single sequence MFE -21.22
Consensus MFE -19.35
Energy contribution -19.46
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.36
Structure conservation index 0.91
SVM decision value 1.10
SVM RNA-class probability 0.915376
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8199455 98 + 23771897
GUCACUGCGGCAUCCUGGGACACUACACACCCCAAACUCUGCUUCCCAGGACAUCAGUGCAUCAGGACAUCCCCAUCUCCAUUCCCAACUCCAUUCUG
(((.(((..(((((((((((..(.................)..))))))))......)))..)))))).............................. ( -21.13)
>DroSec_CAF1 27001 98 + 1
GUCACUGCGGCAUCCUGGGACACUACACACCCCAACCUCUGCCUCCCAGGACAUCAGUGCAUCAGGACAUCCCCAUCCCCAUUCCUAACUUCAUCCUG
(((.(((..(((((((((((..(.................)..))))))))......)))..)))))).............................. ( -21.13)
>DroSim_CAF1 24913 98 + 1
GUCACUGCGGCAUCCUGGGACACUCUACACCCCAACCUCUGCCUUCCAGGACAUCAGGGCAUCAGGACAUCCCCAUCCCCAUUCCUAACUUCAUCCUG
(((.(((.((((...((((...........)))).....))))...))))))....(((.((..((....))..)).))).................. ( -21.40)
>consensus
GUCACUGCGGCAUCCUGGGACACUACACACCCCAACCUCUGCCUCCCAGGACAUCAGUGCAUCAGGACAUCCCCAUCCCCAUUCCUAACUUCAUCCUG
(((.(((..(((((((((((..(.................)..))))))))......)))..)))))).............................. (-19.35 = -19.46 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:47 2006