Locus 2866

Sequence ID 3L_DroMel_CAF1
Location 8,197,064 – 8,197,160
Length 96
Max. P 0.578871
window4478

overview

Window 8

Location 8,197,064 – 8,197,160
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -22.17
Consensus MFE -15.06
Energy contribution -15.68
Covariance contribution 0.61
Combinations/Pair 1.22
Mean z-score -1.43
Structure conservation index 0.68
SVM decision value 0.09
SVM RNA-class probability 0.578871
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8197064 96 - 23771897
GAACGCUUAGCUUGAAUGGCCGCAAAAA--ACCGCUCGCUAAUGGAGCA-UUUAAAUAUGCGAAUGCCAGU--GCUUGGCAUGCUAAUCCAUA--AAACUGUA
....(((.(((.....((((((((....--...((((.(....))))).-........))))...))))..--))).))).............--........ ( -21.29)
>DroSec_CAF1 24704 98 - 1
GAACGCUUAGCUCGAACGGCCGCAAAAA--ACCGCUAGCUAAUGGAGCA-UUUAAAUAUGCGAAUGCCAGU--GCUUGGCAUGCUAAUCAAAUCCAAAAUGUA
......((((((....(((.........--.)))..))))))(((((((-(......))))..(((((((.--..)))))))..........))))....... ( -21.80)
>DroSim_CAF1 22570 95 - 1
GAACGCUUAGCUCGAAUGGCCGCAAAAA--ACCGCUCGCUAAUGGAGCA-UUUAAAUAUGCGAAUACCAGU--GCUUGGCAUGCUAAUCCAAAA-AAAAUG--
....(((.(((.(...((((.((.....--...))..)))).(((.(((-(......)))).....)))).--))).)))..............-......-- ( -18.50)
>DroEre_CAF1 27993 95 - 1
GAACGCUUAGCUCAAAUGGCCGCAAAAA--ACCGCUCGCUAAUGGAGCA-UUUUAAUAUGCGAAAGCCAAU--GCUUCGCAUGCUAAUCUAAA---AAACCUA
....((...((((...((((.((.....--...))..))))...)))).-.......(((((((.((....--))))))))))).........---....... ( -23.20)
>DroWil_CAF1 32846 100 - 1
GAACGCAUAGUUCAAAUAGCCAUAAAAUUCAAAGCUCGCUAAUGGAGCAGCUGAAAUAUGUGAUGGCCAUUCAGCUAUGAAUGCUAAUCCAUU--U-GUUCCA
((((.(((((((..(((.(((((...((....((((.(((.....))))))).....))...))))).))).)))))))((((......))))--.-)))).. ( -24.70)
>DroYak_CAF1 25561 95 - 1
GAACGCUUAGCUCUAAUGGCCGCAAAAA--ACCGCUCGCUAAUGGAGCA-UUUAAAUAUGCGAAAGCCAGU--GCCUCGCAUGCCAAUCUAAA---AAUCCUA
....((...((((((.((((.((.....--...))..)))).)))))).-.......((((((..((....--)).)))))))).........---....... ( -23.50)
>consensus
GAACGCUUAGCUCGAAUGGCCGCAAAAA__ACCGCUCGCUAAUGGAGCA_UUUAAAUAUGCGAAUGCCAGU__GCUUGGCAUGCUAAUCCAAA__AAAAUCUA
....(((.(((.....((((((((.........((((.......))))..........))))...))))....))).)))....................... (-15.06 = -15.68 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:43 2006