Locus 2864

Sequence ID 3L_DroMel_CAF1
Location 8,193,581 – 8,193,673
Length 92
Max. P 0.500000
window4475

overview

Window 5

Location 8,193,581 – 8,193,673
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.15
Mean single sequence MFE -15.18
Consensus MFE -9.20
Energy contribution -9.32
Covariance contribution 0.11
Combinations/Pair 1.21
Mean z-score -1.38
Structure conservation index 0.61
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8193581 92 + 23771897
CAUGAUUCCCACAUCAUUCCCCCCCUUUCACC-CCGCC---CCAACUGCUUUGUUCUCAUGAAUAAUUUGUGGCAACCACUUAAAGGCAGCUGCCC
.(((((......)))))...............-.....---.((.(((((((((((....)))).....((((...))))...))))))).))... ( -14.70)
>DroSec_CAF1 21260 89 + 1
CAUGAUUUCCACAUCAUUUCC--CCUUUCACC--CGCC---CCAACUGCUGUGUUCUCAUGAAUAAUUUGUGGCAACCACUUAAAGGCGGCUGCCC
.(((((......)))))....--.....((.(--((((---..........(((((....)))))....((((...)))).....))))).))... ( -17.30)
>DroSim_CAF1 19177 84 + 1
UAUGAUUUCCACAUCAUUUCC--CCUUUCACC----------CAACUGCUGUGUUCUCAUGAAUAAUUUGUGGCAACCACUUAAAGGCGGCUGCCC
.(((((......)))))....--.........----------.....((..(((((....)))))....))((((.((.((....)).)).)))). ( -13.60)
>DroEre_CAF1 24599 91 + 1
UAUGAUUCCCACAUCAUUUCC--UCCUUUAUCCCCGGC---ACAACUGCUUUGUUCUCAUGAAUAAUUUGUGGAAACCACUUAAAGGCGGCUGCCC
.(((((......)))))....--............(((---(...(((((((((((....)))).....((((...))))...))))))).)))). ( -18.70)
>DroYak_CAF1 21970 94 + 1
CAUGAUUCCCACAUCAUUUCC--UCCUUCAUCCUCCACCAAACAACUGCUUUGUUCUCAUGAAUAAUUUGUGGAAACCACUUAAAGGCGGCUGCCC
.(((((......)))))....--...................((.(((((((((((....)))).....((((...))))...))))))).))... ( -14.20)
>DroPer_CAF1 22273 86 + 1
C----GUCCUGCCUGAACUCU--ACCCUCAUCAUC----AGAUUCUUCUAUUGUUCCCAUGAAUAAUUUGUGGAAACCACUUAAAGGCUGCUCCUG
.----((...((((((((...--......(((...----.))).........))))(((..(.....)..)))...........)))).))..... ( -12.57)
>consensus
CAUGAUUCCCACAUCAUUUCC__CCCUUCACC__CG_C___ACAACUGCUUUGUUCUCAUGAAUAAUUUGUGGAAACCACUUAAAGGCGGCUGCCC
.............................................(((((.(((((....)))))....((((...)))).....)))))...... ( -9.20 =  -9.32 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:41 2006