Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,192,611 – 8,192,718 |
Length | 107 |
Max. P | 0.522086 |
Location | 8,192,611 – 8,192,718 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -26.33 |
Energy contribution | -25.93 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.25 |
Mean z-score | -1.38 |
Structure conservation index | 0.68 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8192611 107 - 23771897 ACCGCUCCGG------CUGUGGUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACACCGCCAACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGC------- .......(((------(((.((.((((.((((.......((((((............)))))).(((((.....)))))......)))).)))).))))))))..........------- ( -39.10) >DroPse_CAF1 21045 107 - 1 ACCGCUCCGG------CUGUGGUGGGAAGCGCCGCCUAUGUGGCACCUUAUGCUUCCAGCUUCACCGCCCACUCGGUUGCCCACAGCGCCGCCUUUCCUGCUGCGUACACUGC------- ...((.(((.------.((.(((((((((((((((....)))))......((....))))))).)))))))..)))..)).....((((.((.......)).)))).......------- ( -38.90) >DroGri_CAF1 24427 120 - 1 ACCGCACCAGCAGCCGCUGUUGUUGGCAGCGCCGCCUAUGUGGCGCCCUACGCGUCCAGCUAUACCGCUAACCAGGUCGCCCACAGCGCCGCCUUCCCCGCUGCCUACACUGCACCGAUU ...(((.((((....)))).(((.(((((((........(((((((.....(((.(((((......))).....)).))).....)))))))......))))))).))).)))....... ( -44.34) >DroWil_CAF1 21175 107 - 1 ACUGCUCCAG------CUGUCGUAGGUAGUGCCGCCUAUGUGGCUCCCUAUGCCUCCAGCUUCAACGCUCACCAGGUAGCCCACAGUGCUGCCUUCCCAGCUGCAUACACCGC------- ..(((...((------(((.((((((....(((((....)))))..))))))....))))).....(((....(((((((.......)))))))....))).)))........------- ( -34.20) >DroYak_CAF1 20932 101 - 1 ACCGCUCCGG------CUGUGGUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACACCGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUA------------- .......(((------(((.(((((((.(((..((....(.(((.......))).)..))..))).))))))).((((((.......))))))....))))))....------------- ( -40.30) >DroPer_CAF1 21393 107 - 1 ACCGCUCCGG------CUGUGGUGGGAAGCGCCGCCUAUGUGGCACCUUAUGCUUCCAGCUUCACCGCCCACUCGGUUGCCCACAGCGCCGCCUUUCCUGCUGCCUACACUGC------- ...((.(((.------.((.(((((((((((((((....)))))......((....))))))).)))))))..)))..))...(((((..........)))))..........------- ( -35.80) >consensus ACCGCUCCGG______CUGUGGUGGGCAGCGCCGCCUAUGUGGCUCCCUACGCCUCCAGCUACACCGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACUGC_______ .(((((.((((....)))).)))))((((((((((....))))).......((.....((......))......(((.((.....))))))).......)))))................ (-26.33 = -25.93 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:40 2006