Locus 286

Sequence ID 3L_DroMel_CAF1
Location 819,827 – 819,926
Length 99
Max. P 0.903588
window428

overview

Window 8

Location 819,827 – 819,926
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 75.62
Mean single sequence MFE -35.80
Consensus MFE -21.34
Energy contribution -21.07
Covariance contribution -0.27
Combinations/Pair 1.44
Mean z-score -1.82
Structure conservation index 0.60
SVM decision value 1.03
SVM RNA-class probability 0.903588
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 819827 99 + 23771897
ACCUCCUCCUUGGUGGCAAAGGCCUCUAGCACACUGGCCCAUUCGGAGCCCCAUAUGGAGACGCUGAAGAAGAGCGAUUCUGCCCAGGAGGAGCAGGAA
..((((((((.((..(.......(((((.......(((((....)).))).....))))).((((.......))))...)..)).))))))))...... ( -36.30)
>DroVir_CAF1 2152 96 + 1
ACGUCCACUAUUGAGCGCAAAGUGUCAA---CGCCUGCGUUAGUUGAACUCAAAGUUGAGGCCAUGGCCAACAGCGAUCCACAGUCGGACGGUCAAGAA
.((((((((....((((((..(((....---))).)))))).(((((((.....)))..(((....)))..)))).......))).)))))........ ( -29.10)
>DroSec_CAF1 2109 99 + 1
ACCUCCUCCUUGGUGGCAAAGGUCUCUAGCACACUGGCCCAUUCGGAGCCCCAAAUGGAGACGCUGAAGAAGAGCGAUUCUGCACAUGAGGAGCAGGAA
.(((.(((((((...(((...(((((((.......(((((....)).))).....)))))))(((.......))).....)))...))))))).))).. ( -35.90)
>DroSim_CAF1 2106 99 + 1
ACCUCCUCCUUGGUGGCGAAGGCCUCUAGCACACUGGCCCAUUCGGAGCCCCAAAUGGAGACGCUGAAGAAGAGCGAUUCUGCACAGGAGGAGCAGGAA
..(((((((((((.(((....))).)))((.....(((((....)).)))......((((.((((.......)))).))))))..))))))))...... ( -38.50)
>DroEre_CAF1 2140 99 + 1
ACCUCAUCUCUGGCGCCGAAGGCCUCCAACACACUGGCCAAUUCGGAGCCCCAAAUGGAGACGCUGAAGAACAGCGACUCUGCCGAGGAGGAGCAGGCA
.((((..(((.(((.(((((((((...........))))..))))).)))......((((.(((((.....))))).))))...)))))))........ ( -38.40)
>DroYak_CAF1 2130 99 + 1
ACCUCUUCUCUGGUGGCAAAGGCCUCCAACACGCUGGCCAACUCGGAGCCCCAAAUGGAGACGCUGCGGCAGAGCGAUUCCGCCAAGGAGGAGCACGAA
..((((((..((((((....((((..(.....)..))))..(((...(((.((..((....)).)).))).))).....))))))..))))))...... ( -36.60)
>consensus
ACCUCCUCCUUGGUGGCAAAGGCCUCUAGCACACUGGCCCAUUCGGAGCCCCAAAUGGAGACGCUGAAGAAGAGCGAUUCUGCCCAGGAGGAGCAGGAA
..(((((((.(((.(((...((((...........))))........))))))...((((.((((.......)))).)))).....)))))))...... (-21.34 = -21.07 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:20 2006