Locus 2859

Sequence ID 3L_DroMel_CAF1
Location 8,175,562 – 8,175,656
Length 94
Max. P 0.514292
window4466

overview

Window 6

Location 8,175,562 – 8,175,656
Length 94
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.17
Mean single sequence MFE -29.85
Consensus MFE -19.59
Energy contribution -19.68
Covariance contribution 0.09
Combinations/Pair 1.41
Mean z-score -1.18
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.514292
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8175562 94 + 23771897
GAUCUGCAAGCUGGUGAUCAUAUCGUUCCGCAGAAAGGGCUCCAGGCAGGUGGUCAGAAAAUUGAGUCG--CACUGACUCGCCUGGCCAUUUUUUC
.((((((...((((.(.((...((........))...))).))))))))))((((((.....((((((.--....)))))).))))))........ ( -27.80)
>DroVir_CAF1 4951 94 + 1
CAGCUGUUUCCGUGUUGCCGGCUCAUCGUCCAGCAAAUCCUGCAGACAAAUGUGCAGAAAAUUCAGUGGUCCACUGGCU--GCUGUCCAUUCCCGU
.(((((............)))))....(..(((((....(((((.(....).))))).....((((((...)))))).)--))))..)........ ( -22.20)
>DroSec_CAF1 3287 94 + 1
GACCUGCAAACUGGUGAUCAUAUCGUUCUGCAGAAAGGGCUUCAGGCAGGUGGCCAGAAAAUUGAGUCG--CACUGACUCGCCUGGCCAAUUUUUC
.((((((...((((.(((...)))(((((......))))).))))))))))((((((.....((((((.--....)))))).))))))........ ( -32.20)
>DroSim_CAF1 3262 94 + 1
GACCUGCAAACUGGUGAUCAUAUCGUUCUGCAGAAAGGGCUCCAGGCAGGUGGCCAGAAAAUUGAGUCG--CACUGACUCGCCUGGCCAAUUUUUC
.((((((...((((.(((...)))(((((......))))).))))))))))((((((.....((((((.--....)))))).))))))........ ( -34.40)
>DroEre_CAF1 3508 94 + 1
GAUCUGCAAACUGGUGGGCACAUCAUUCCGGAGAAUGGGCUCCAGGCAGGUGGCCAGAAAAUUGAGUCG--CUCUGACUCGCCCUGCCAAUUCUUU
...........((((((((...((.....((((......)))).(((.....))).)).....(((((.--....))))))))).))))....... ( -30.00)
>DroYak_CAF1 3390 94 + 1
GAUCUGCAAACUGGUGACCACAUCAUUCCGGAGCAAGGGCUCCAGGCAGGUGGCCAAAAAAUUGAGUCG--CACUGACUCGCCCGGCCAAUUCUUC
.((((((....(((((....)))))....(((((....)))))..))))))((((.......((((((.--....))))))...))))........ ( -32.50)
>consensus
GAUCUGCAAACUGGUGAUCAUAUCAUUCCGCAGAAAGGGCUCCAGGCAGGUGGCCAGAAAAUUGAGUCG__CACUGACUCGCCUGGCCAAUUCUUC
.((((((....(((((....))))).(((.......)))......))))))((((((.....(((((((.....))))))).))))))........ (-19.59 = -19.68 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:32 2006