Locus 2857

Sequence ID 3L_DroMel_CAF1
Location 8,167,236 – 8,167,331
Length 95
Max. P 0.553232
window4463

overview

Window 3

Location 8,167,236 – 8,167,331
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.03
Mean single sequence MFE -16.58
Consensus MFE -11.17
Energy contribution -11.12
Covariance contribution -0.05
Combinations/Pair 1.23
Mean z-score -1.37
Structure conservation index 0.67
SVM decision value 0.04
SVM RNA-class probability 0.553232
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8167236 95 + 23771897
CUGA-GUAUUUAGAUU-----GUUUUCUAAAUUGUAAUCU-AUGCUUUUCAGUUGGUUCUUAACUACCUGAAGCAUUCACUGUGCGCCCAUCUCGUUUCUCA
..((-(.(((((((..-----....))))))).(((....-(((((..((((.((((.....)))).)))))))))......)))......)))........ ( -19.00)
>DroSec_CAF1 1889 95 + 1
UUGA-UUAUUUAGAUU-----GUUUUCUAAAUUGUAAUUU-AUGCCUUUCAGUUGGUUCUUAACUACCUGAAGCACUCACUGUGCGCCCAUCUCGUUUCUCA
...(-(.(((((((..-----....))))))).)).....-..((..(((((.((((.....)))).)))))((((.....))))))............... ( -18.30)
>DroSim_CAF1 1716 95 + 1
UUGA-UUAUUUAGAUU-----GUUUUCUAAAUUGUAAUUU-AUGCCUUUCAGUUGGUUCUUAACUACCUGAAGCACUCACUGUGCGCCCAUCUCGUUUCUCA
...(-(.(((((((..-----....))))))).)).....-..((..(((((.((((.....)))).)))))((((.....))))))............... ( -18.30)
>DroEre_CAF1 1768 95 + 1
GUAA-UUAUUUAGUUU-----GCUUUCUUAAUUGUAAUUA-AUUCUGUUUAGUUGGUGCUGAACUACCUGAAGCACUCACUGUGCGCCCAUCUCGUUUCUCA
....-...(((((.((-----((..........))))...-.....(((((((....)))))))...)))))((((.....))))................. ( -14.80)
>DroYak_CAF1 2049 95 + 1
AUAA-CUAUUUAGUUU-----GCUUUUAUAAUAGUAAUUU-AUUCCGUUCAGUUGGUGCUCAACUACCUAAAGCACUCACUGUGUGCCCAUCUCGUUUCACA
...(-(((((.((...-----.)).....)))))).....-....((..((((.((((((...........)))))).))))..))................ ( -14.60)
>DroAna_CAF1 1720 100 + 1
CUAAACAAAUUAAACAAUAAAGAAAUCUAAA--GCAAUUCUCUCGUACUCAGCUGGUUCUGAACUACCUGAAGCACUCACUGUGCGCCCAUCUCGUCUCCCA
....................(((........--((.............((((.((((.....)))).)))).((((.....))))))........))).... ( -14.49)
>consensus
CUAA_UUAUUUAGAUU_____GUUUUCUAAAUUGUAAUUU_AUGCCUUUCAGUUGGUUCUUAACUACCUGAAGCACUCACUGUGCGCCCAUCUCGUUUCUCA
...............................................(((((.((((.....)))).)))))((((.....))))................. (-11.17 = -11.12 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:29 2006