Locus 2856

Sequence ID 3L_DroMel_CAF1
Location 8,164,034 – 8,164,133
Length 99
Max. P 0.603446
window4462

overview

Window 2

Location 8,164,034 – 8,164,133
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 85.93
Mean single sequence MFE -42.77
Consensus MFE -31.42
Energy contribution -32.40
Covariance contribution 0.98
Combinations/Pair 1.29
Mean z-score -2.62
Structure conservation index 0.73
SVM decision value 0.14
SVM RNA-class probability 0.603446
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8164034 99 + 23771897
GAGCAUUGGCGGAGCAGCUGGAGUUCCGCCGAGCAGUGCAAGUGCAGCCGGAGCAGGCACUGGUGGAAGUGGCGGUGAUGGCAAGUCGGCUGUUUCUGU
..((.((((((((((.......))))))))))))...(((...((((((((.((...(((((.(......).)))))...))...))))))))...))) ( -44.10)
>DroSec_CAF1 18526 99 + 1
GAGCAUUGGCGGAGCAGCUGGAGUUCCGCCGAGCAGUGCAGGUGCGGCCGGAGCAGGCACUGGUGGAAGUGGUGGUGAUGGCAAGUCGGCUGUUUCUGU
..((.((((((((((.......))))))))))))...(((((.((((((((.((...(((((.(......).)))))...))...)))))))).))))) ( -45.70)
>DroSim_CAF1 19253 99 + 1
GAGCAUUGGCGGAGCAGCUGGAGUUCCGCCGAGCAGUGCAGGUGCGGCCGGAGCAGGCACUGGUGGAAGUGGCGGUGAUGGCAAGUCGGCUGUUUCUGU
..((.((((((((((.......))))))))))))...(((((.((((((((.((...(((((.(......).)))))...))...)))))))).))))) ( -48.00)
>DroEre_CAF1 19989 99 + 1
GAGCAUUGGCGGAGCAGCUGGAGUUCCGCCGAGCAGUGCUGGUGCAGUCGGAGCAGGCACUGGUGGAAGUGGCAGUGAUGGCAAAUCGUCUGUUUCUGU
..((.((((((((((.......))))))))))))..(((....)))...(((((((((((((.(......).))))(((.....))))))))))))... ( -39.40)
>DroYak_CAF1 19175 99 + 1
GAGCAUUGGCGGAGCAGCUGGAGUUCCGCCGAGCAGUGCUGGUGCAGUCGGAGCAGGCACUGGUGGAAGUGGCAGUGAUGGCAAAUCGGCUGUUUCUGU
..((.((((((((((.......))))))))))))...((.((.((((((((.((...(((((.(......).)))))...))...)))))))).)).)) ( -41.00)
>DroPer_CAF1 16745 87 + 1
AAGCAUCGGCGGUGCUGCUGGCGUUCCCCCCAGUGGUGCUGGUGC---------UGGUGCUAGUGGAAGUG---CUGAUGGAAAAUCGACUGCCACUGA
.(((((((((((..(..((((........))))..)..))...))---------)))))))(((((.(((.---.((((.....))))))).))))).. ( -38.40)
>consensus
GAGCAUUGGCGGAGCAGCUGGAGUUCCGCCGAGCAGUGCAGGUGCAGCCGGAGCAGGCACUGGUGGAAGUGGCGGUGAUGGCAAAUCGGCUGUUUCUGU
..(((((((((((((.......))))))))....))))).((.((((((((.((...(((((.(......).)))))...))...))))))))..)).. (-31.42 = -32.40 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:28 2006